Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq68 266 4e-65 seq13 150 2e-30 seq81 138 1e-26 seq101 120 4e-21 seq37 114 2e-19 seq99 109 7e-18 seq133 91.5 2e-12 seq98 91.5 2e-12 seq144 86.0 8e-11 >seq68 Length=472887 Score = 266 bits (294), Expect = 4e-65 Identities = 365/507 (72%), Gaps = 15/507 (3%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| || |||||| || ||||| |||||||| |||| |||||| Sbjct 102804 GCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCATGGGGACGATGCCGTT 102745 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| |||||| || || | ||||| ||||| ||||||||| |||||| || | Sbjct 102744 CGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACGTTGTGCACGTGGAC 102685 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||| Sbjct 102684 GCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGCGTGTCGTAGATGCC 102625 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| |||||| ||| | |||| || ||||| ||||| |||||||| | ||| Sbjct 102624 CTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGACATTTGCGGGACGGGCGT 102565 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||||||||| | || || | ||| |||||| ||| | |||||| || ||| Sbjct 102564 GCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTCTCGGACATGAGGTTGTA 102505 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 || | | | |||| ||| || ||| || | | ||||| ||| Sbjct 102504 CGT---TTGGATGGCCGCC-GCG-AT-ATCC---------GACTTGTGGATGCCGACGGC 102460 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481 ||||||||| ||||||| ||| || |||||| ||| |||| ||||| |||||| Sbjct 102459 GACGCGCATCAGCATGTGCTGTGGGCGCTCGGCGATCTTGCCGTCGACCTTCAGCAGGTA 102400 Query 1630482 GGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGAT 1630541 ||||| || |||| ||| ||| || ||| |||| | |||||||| |||| | ||| Sbjct 102399 CGACCGTTCCAGGGTCTTGAAGCCGAAATAGTCAAAGTCGAAATCGCGATCGTAGATGAT 102340 Query 1630542 GGCGGCGTCGAGGGCATCGCGGTGCGC 1630568 || | ||||||| |||| || ||| Sbjct 102339 GGACGAGTCGAGGAGTTCGCCGTTCGC 102313 Score = 174 bits (192), Expect = 2e-37 Identities = 371/542 (68%), Gaps = 18/542 (3%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||| ||||| |||| |||||||||| ||||||||| | ||||| ||||||||||| Sbjct 104250 TGGTCAACGGTGAACTTGATGGCGTCGACGGCGGGCCGAGATCGCAGGTAGTACATGCCC 104191 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGC- 1627100 ||||||||||| ||| |||||| ||||||||||| | || | || Sbjct 104190 GTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCA-GCTTGCCAAAGTTAAT 104132 Query 1627101 GTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||||| || | ||||| ||| || |||||| | ||| |||||||||| || Sbjct 104131 GTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAAGGCGCCGCGATCGGCGGC 104072 Query 1627161 CATGTCGATG-GTGAC--CCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAG 1627217 |||||| || | ||| | | ||| | |||||| ||||||||| | | | ||||||| Sbjct 104071 CATGTCAATCAGCGACTTCTGCTTG---ATCTCCCAAACGGTCTTGTACAGGTCCTTGAG 104015 Query 1627218 GTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCT 1627277 || |||| | ||| | ||| | ||| ||||| |||| || | ||| Sbjct 104014 ATCCTGCGGGAT----TCG--GTCAATGTTCTGGACCGACCCGTTGTGTGCCATCAGCTG 103961 Query 1627278 GTCGCGAAAGTCGGGCGTCC-ACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGT 1627336 || ||| |||||| ||||| ||||||| || |||||| | | |||||| || Sbjct 103960 GTGGCGCAAGTCGT-CGTCCCACAGGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTGT 103902 Query 1627337 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCT 1627396 ||| ||||| || || || | ||||| || | || |||||||||| | ||| || Sbjct 103901 TGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTTGCTCGTGTACGGCT 103842 Query 1627397 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 1627456 || | |||| |||| ||||||||||| || | || |||||||| |||| | | Sbjct 103841 CGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGGCATCGGCGCGAGCA 103782 Query 1627457 GGAGCGAGTTGCGCAGGCCGTG-CTGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAG 1627515 | | ||| || |||| ||| || | | ||| | | || |||||||||||||||||| Sbjct 103781 GCAACGAATTCCGCATGCCATGCCGGGCGATATCG-GCCTTCAGCGCGTCCCAGTCCCAT 103723 Query 1627516 CG 1627517 || Sbjct 103722 CG 103721 >seq13 Length=678328 Score = 150 bits (166), Expect = 2e-30 Identities = 169/223 (76%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| ||||||||| || | |||||||||||| |||| ||| Sbjct 493617 GCTTGGCGAGCTCACCGGGCAGGATCAGGCGGACAGAGGTCTGGATCTCACGCGA--CGA 493674 Query 1254403 TCGTGTTGCGCTTG---TTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || | |||| || || |||| |||||||||||||| | ||||||| |||| Sbjct 493675 CAGGGTGGA-CTTGGAGTTGTAGCGCGCAAGACGGCCGGCCTCCAGGGCGATGCGCTCGA 493733 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| ||||||||||||| ||||| | | ||||| ||| ||||| Sbjct 493734 AGATGTCGTTGATGAACGAGTTCATGATGGACATGGCGCGGCGCGAGATACCCGTGTCGG 493793 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||| |||||||| || |||||||||||| ||| || |||||| Sbjct 493794 GGTGGACCTGCTTCAGGACCTTGTAGATGTACGTCGCGTACGA 493836 >seq81 Length=417576 Score = 138 bits (152), Expect = 1e-26 Identities = 166/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| ||| |||||| || |||| ||||||||||||||||| ||| Sbjct 276599 GCTTGGCGAGTTCACCGGGCAGGATCAGACGGACGGAGGTCTGGATCTCGCGCGA--CGA 276656 Query 1254403 TCGTGTTGCGCTTG---TTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || | |||| || || |||| || || |||||||| | ||||| |||| Sbjct 276657 CAGCGTCGA-CTTGGAGTTGTAGCGCGCAAGGCGCCCGGCCTCAAGCGCAATGCGCTCGA 276715 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| ||||||||||||| ||||| | | ||||| ||| ||| | Sbjct 276716 AGATGTCGTTGATGAACGAGTTCATGATGGACATGGCACGGCGCGAGATACCCGTGTCAG 276775 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||| |||||||| || |||||||||||| ||| || |||||| Sbjct 276776 GGTGGACCTGCTTCAGGACCTTGTAGATGTACGTCGCGTACGA 276818 >seq101 Length=873781 Score = 120 bits (132), Expect = 4e-21 Identities = 171/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || || |||||| ||||| |||||||||| || |||| Sbjct 438953 GCCTTTTGGTATTCACCGACTCGTTTCTCGAAGAAGTTCGTCTTGCCCTGAAGGCTGATC 439012 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTT-GTAGTGCTTTTCGCAT--CCGAGCGAC 868807 | ||||||||| ||||||||| || ||| |||||| ||||| | || |||| Sbjct 439013 AGGTCCATCCACTCGAACGGGTTTT-CGACTTTGTAGTG--TTTCGGAAGGCCCAGCGCA 439069 Query 868808 GCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCG 868867 || |||| ||||| || ||||||||||||||||| |||| ||| | |||||||| Sbjct 439070 GCCAGCAACCGGTCAGCCACAAACTCGATGTACTGCGACATCAGGAGAGAATTCATGCCA 439129 Query 868868 ATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 ||||| | || || |||| |||| || || || ||||| ||||| || || || Sbjct 439130 ATGAGGTCAACTGGTAGCGCATCGCAAACGAATTCCTTCTCAATCTCAACAGCTTC 439185 Score = 86.0 bits (94), Expect = 8e-11 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 869741 CTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGAC 869800 || ||||| || || |||||||||| |||||| || || | |||||| ||| | |||| | Sbjct 439811 CTTGCGGCAAAGAAGGCCAGGACGTTCTTGATGAAATGTCTCTCGTCATCGTTAAGCGCC 439870 Query 869801 ACCCAGTGGACGGTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTC 869859 |||| | | || ||| ||||| | ||| || |||||||||| ||| || | Sbjct 439871 GCCCAATCCTTGTGATCTTGCGAC-AGGTCAATCTCTTCCGCGGTCCAGAACGATGCGAC 439929 Query 869860 GGCCTTTTTGTACATCTCCCATACTTGCTGGTAGC-GGATAGGGAAGAGGACAAAGCGGT 869918 || |||||||||||||| || | || || ||| ||||||||||| || |||| Sbjct 439930 ATGTTTCTTGTACATCTCCCAAAC-GGATGAATGCTCGATGGGGAAGAGGACGAACCGGT 439988 Query 869919 TGGGGTTGTC 869928 | ||||| || Sbjct 439989 TCGGGTTCTC 439998 >seq37 Length=5730 Score = 114 bits (126), Expect = 2e-19 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 1178263 GATCGTGCACCGCGACCTCAAGTCGTCCAACCTGCTCGTCGACGACAACTTCACAATCAA 1178322 |||| ||||| | ||||| ||| | ||||| || |||||| ||||| |||| Sbjct 4882 GATCCTGCACAGGGACCTGAAGACCGATAACCTCCTGGTCGACCGCAACTGGGTCGTCAA 4941 Query 1178323 GGTGGCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGCGAC-GATGACGCGGTGCG 1178381 ||| |||||||||||| | | || ||| || || || | || |||||||| | || Sbjct 4942 GGTCGCCGACTTTGGCCTGACGCGGTTCCTGGACGAGAA-GAAACAGATGACGCAGGTCG 5000 Query 1178382 GCACGCCGGCGTGGACGGCGCCCGAGGTCCTGC-GCGGCGAGCGCTACTCGGAAAAGGCC 1178440 | ||||| |||| | |||||||||| |||| ||||| ||| |||| |||||| Sbjct 5001 GGACGCCAATCTGGATGTCGCCCGAGGT-CTGCATGGGCGACAAGTACACGGAGAAGGCC 5059 Query 1178441 GACGTCTACTCGTTTGGCGTCGTCATGTGGGAGATCATCACGCG 1178484 ||||| ||| |||| ||| || |||||||||||||||| || || Sbjct 5060 GACGTGTACGCGTTCGGCATCATCATGTGGGAGATCATGACCCG 5103 Score = 109 bits (120), Expect = 7e-18 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 1349473 ATCGTGCACCGCGACCTCAAGAGCGGCAACCTGCTGGTCGACCAAAACTACAACGTCAAG 1349532 ||| ||||| | ||||| |||| || ||||| |||||||||| |||| ||||||| Sbjct 4883 ATCCTGCACAGGGACCTGAAGACCGATAACCTCCTGGTCGACCGCAACTGGGTCGTCAAG 4942 Query 1349533 GTGGCCGACTTTGGCCTGGCGCGCATTAAGGAGGACAACGCCAC-GATGACCCGCTGCGG 1349591 || ||||||||||||||| |||| | ||| || || | || |||||| | ||| Sbjct 4943 GTCGCCGACTTTGGCCTGACGCGGTTCCTGGACGAGAA-GAAACAGATGACGCAGGTCGG 5001 Query 1349592 CACGCCCTGCTGGACGGCGCCCGAGGT---CATACGCGGCGAGCGCTACGACGAGCGGGC 1349648 ||||| ||||| | |||||||||| ||| ||| | || ||| ||| ||| Sbjct 5002 GACGCCAATCTGGATGTCGCCCGAGGTCTGCATGGGCGACAAG---TACACGGAGAAGGC 5058 Query 1349649 CGACGTCTACTCATTTGGCATCATCGCGTGGGAG 1349682 |||||| ||| | || ||||||||| ||||||| Sbjct 5059 CGACGTGTACGCGTTCGGCATCATCATGTGGGAG 5092 Score = 87.8 bits (96), Expect = 2e-11 Identities = 160/228 (70%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 1850339 ATCGTCCACCGCGACCTCAAGTCGTCCAACCTGCTGGT-GACCGACGACTACTCGGTCAA 1850397 ||| | ||| | ||||| ||| | ||||| ||||| ||||| | ||| ||||| Sbjct 4883 ATCCTGCACAGGGACCTGAAGACCGATAACCTCCTGGTCGACCG-CAACTGGGTCGTCAA 4941 Query 1850398 GGTGGCCGACTTTGGCTTTGCGCGCATCAAGGAGGCCAACGCGACC-ATGACCCGGTGCG 1850456 ||| |||||||||||| | |||| || ||| | || | || ||||| | | || Sbjct 4942 GGTCGCCGACTTTGGCCTGACGCGGTTCCTGGACGAGAA-GAAACAGATGACGCAGGTCG 5000 Query 1850457 GCACGCCCTGCTGGACGGCGCCCGAGGTT---ATTCGCGGCGCGCGCTACTCGGAAAAGG 1850513 | ||||| ||||| | |||||||||| || ||| | | ||| |||| |||| Sbjct 5001 GGACGCCAATCTGGATGTCGCCCGAGGTCTGCATGGGCGACAAG---TACACGGAGAAGG 5057 Query 1850514 TCGACGTCTACTCTTTCGGCGTCGTCATGTGGGAGGTGGTGACCCGGC 1850561 |||||| ||| | |||||| || ||||||||||| | ||||||||| Sbjct 5058 CCGACGTGTACGCGTTCGGCATCATCATGTGGGAGATCATGACCCGGC 5105 >seq99 Length=174244 Score = 109 bits (120), Expect = 7e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 509127 TCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCGCCGGTGCATCAAGT 509186 |||||||||||||||||||||| |||||||| |||||||||||||| || | ||||| Sbjct 48695 TCGTCGACACGGCCGTCAAGACCGCCGAGACCGGCTACATCCAGCGGCGCCTCGTCAAGG 48754 Query 509187 CGATGGAGAGCCTGCAGATCAAGCGCGGCGGCCTCGTGCGCAACGCCAACGGCGACATCG 509246 | |||||| | | ||||||| || |||| |||||| ||| || || |||||| Sbjct 48755 CCATGGAGGACGTCATGATCAAGTACGACGGCACCGTGCGGAACAGCATGGGTGACATCA 48814 Query 509247 TCCAGTTTGCCTATGGCGGCGACGG 509271 ||||||| || |||| ||||| Sbjct 48815 TCCAGTTCCTGTACGGCGAGGACGG 48839 >seq133 Length=764586 Score = 91.5 bits (100), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 18061 ATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGC 18120 |||||||| ||||| || || | || || || || |||||||||||| | |||| Sbjct 412633 ATGAGCACGTTCGGTGCCGTGTTCCGCGTGACGACGTTCGGCGAGTCGCACTGTCGGGGC 412574 Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAG 18180 || || |||||| |||| || ||||||||| |||||| || |||| ||| |||||| Sbjct 412573 GTGGGGTGCATCGTCGATGGGGTGCCGCCGCGCATGCGCTTGTGTGAGGGCGATATCCAG 412514 Query 18181 CCTCAGTTGGATCGGCGCCGACCGGGCCAG 18210 ||| || |||||| || ||||| ||| Sbjct 412513 GGGCAGCTGTCTCGGCGGCGCCCGGGGCAG 412484 >seq98 Length=189600 Score = 91.5 bits (100), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 1592129 CCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCC 1592188 ||||||||| |||| | |||| || |||| | ||| || ||| ||||||| ||| Sbjct 154593 CCGTGGGACGCCGAGTATGTCGACATCCCGCAGGACGTCCTGTTCGAGCTGATCCTGGCC 154652 Query 1592189 GCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTG---CAAGTCTGTGGCCAAC 1592245 ||||||||| | ||||||||||| || ||||| || || |||| || ||| Sbjct 154653 GCCAACTACATGGACATCAAGCCGCTCCTCGACCTGACCTGCGCCAAG---GTCGCCTCG 154709 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAA 1592280 ||| | ||||||||| ||||||||||||||||| Sbjct 154710 ATGCTGAAGGGCAAGAGCCCCGAGGAGATCCGCAA 154744 >seq144 Length=755806 Score = 86.0 bits (94), Expect = 8e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1574057 CCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGC 1574116 |||||| || || |||||| | ||||| ||||||||||||||| | | ||||| || Sbjct 698094 CCTGCCACCGAACCGGCACAAGATTATCATTCTCGACGAGGCCGACAGTATGACGTCCGC 698153 Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176 || |||||||| || || || ||||| | | | ||||||| ||||||||||| Sbjct 698154 AGCGCAGCAGGCGCTTCGTCGGACGATGGAGATCTATTCGGACACGACCCGCTTTGCCCT 698213 Query 1574177 GGCGTGCAACACGTC 1574191 || ||||| ||||| Sbjct 698214 TGCCTGCAATACGTC 698228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107125659327305