Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq68 172 5e-38 seq112 118 1e-21 seq1 111 1e-19 seq122 100 3e-16 >seq68 Length=472887 Score = 172 bits (190), Expect = 5e-38 Identities = 374/551 (68%), Gaps = 19/551 (3%) Strand=Plus/Minus Query 139469 AACCCATGTTACGTTT--CATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAG 139526 |||||| | ||| ||| || | ||||| || || | ||| |||||||| |||||||| Sbjct 102897 AACCCAGGGTACCTTTTTCAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAG 102838 Query 139527 ATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACAGCATT 139583 || | ||| | ||||| || ||||| ||| || || ||||||| || ||| | Sbjct 102837 GTACACGGCGAACGCGCCCTTGCGTTTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTC 102778 Query 139584 ATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG-- 139641 ||| ||||| | ||| || | | ||| ||| || ||||| || | ||| ||| Sbjct 102777 GGAGAACACGCGAAGCATGGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTA 102718 Query 139642 GGA-CTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGA 139700 ||| | | || || || |||| || || | || ||| || |||||| | | ||||| Sbjct 102717 GGAGCCGGTG---GCGCGCACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGA 102661 Query 139701 TATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGT 139760 || | |||| ||||| | || ||||| || || ||| ||||| || | || Sbjct 102660 GATGATGGCGCATTCGCGCAGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGC 102601 Query 139761 GACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACT 139820 ||||| ||||| ||||| | |||||| | ||||||||| |||| || || Sbjct 102600 CACCAGGAAGCAGGACGACATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGA 102541 Query 139821 CGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC 139880 ||||||||||||| | | ||||| | | |||||||| |||||| | | ||||| Sbjct 102540 CGCGTGCGTGAACCACTTCTCGGACATGAGGTTGTACGTTTGGATGGCCGCCGCGATATC 102481 Query 139881 C--CTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACC 139938 | ||| |||||| ||||| | ||| ||||||||||| || || || ||||| | | Sbjct 102480 CGACTT--GTGGATGCCGACGGCGACGCGCATCAGCATGTGCTGTGGGCGCTCGGCGATC 102423 Query 139939 GCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTAT 139996 ||| |||| || ||| || ||||| || ||||||||| |||| || || | Sbjct 102422 TTGCCGTCGACCTTCAGCAGGTACGACCGT--TCCAGGGTCTTGAAGCCGAAATAGTCAA 102365 Query 139997 AGTTGAAATCG 140007 ||| ||||||| Sbjct 102364 AGTCGAAATCG 102354 Score = 96.9 bits (106), Expect = 3e-15 Identities = 367/568 (65%), Gaps = 16/568 (3%) Strand=Plus/Minus Query 138157 TCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGTT 138216 || || || ||||| ||||| || |||| || | || ||| || ||||| ||||| Sbjct 104247 TCAACGGTGAACTTGATGGCGTCGACGGCGGGCCGAGATCGCAGGTAGTACATGCCCGTC 104188 Query 138217 TTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGTTTC 138276 || | || || ||||||||| | || ||||| || || || |||| | || Sbjct 104187 TTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAGCTT-GCCAAAGTTAATGTC 104129 Query 138277 GC-CAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCAT 138335 | || | ||| |||||||| ||| || ||||| ||||| ||||| |||||| Sbjct 104128 GGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAAGGCGCCGCGATCGGCGGCCAT 104069 Query 138336 GTTAATTAA--ATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATGT 138393 || ||| | | || | ||| |||||||| ||||||||||| || || | || Sbjct 104068 GTCAATCAGCGACTTCTGCTTG--ATCTCCCAAACGGTCTTGTACAGGTCCTTGAGATCC 104011 Query 138394 CGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATG 138453 |||| ||| |||| || || | ||||||| || || | | | | || | Sbjct 104010 TGCGGGATTCGGTCAATGTTCTGGACCGACCCGTTGTGTGCCATCAGCTGGTGGCGCAAG 103951 Query 138454 TCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGA 138513 || |||| |||| | ||||||| ||| | ||| | |||| ||||| Sbjct 103950 TCGTCGTCCCACAGGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTGTTGATGACGGTG 103891 Query 138514 AATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCG 138573 || ||||| |||| || || | |||| |||||| | ||| | ||||| || | ||| Sbjct 103890 AACTCACCAGCCAGCACACGTCTCGCGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCG 103831 Query 138574 TTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTC 138633 ||||| ||||| ||||| || | ||| || ||||| ||| | || | |||||| Sbjct 103830 TTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGGCATCGGCGCGAGCAGCAACGAATTC 103771 Query 138634 CGTAAACCGTGAAGCTTGAT-TCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTA-- 138690 || | || || | ||| ||| |||| |||| |||||||| ||||| | Sbjct 103770 CGCATGCCATGCCGGGCGATATCG-GCCTTCAGCGCGTCCCAGTCCC----ATCGCGACG 103716 Query 138691 --GGTTTTTTGTTCCACATATCGTACTG 138716 || ||| |||||||| ||| |||| Sbjct 103715 ACGGCTTTACATTCCACATGTCGAACTG 103688 >seq112 Length=800634 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||||||||| | || || || || || || || |||||||| || || || | Sbjct 315320 ACGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGC 315261 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 |||||| | || ||||| || |||||||| || || || || || || || || Sbjct 315260 GGCGACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGAC 315201 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| ||||||||||||| || ||||||||||| | | | || | || || Sbjct 315200 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTAC 315141 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| ||||| ||||| || || | || |||| |||| || || Sbjct 315140 AACATTCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGCGG 315091 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 24697 TGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGA 24756 || ||||||||||||||| | || ||||| || || || || |||||||| || || || Sbjct 314862 TGGTACGATGCAGATCTTCGTCAAGACGCTGACAGGAAAGACCATTACGCTTGACGTCGA 314803 Query 24757 AGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCC 24816 | |||||| | |||||||| || ||||| || |||||||| || || || || Sbjct 314802 CTCGGGTGACACAATCGAAACGGTGAAGGCCAAGATTCAGGACAAAGAGGGTATTCCCCC 314743 Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || ||| ||||||| ||||| || |||||||||||| Sbjct 314742 GGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGAT 314700 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 ||||||||||||||| | || ||||| || || || || || || | || || || | Sbjct 315090 TACGATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGACTC 315031 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 |||||| | || ||||| ||| ||||| || ||||| || || || ||||| || Sbjct 315030 AGGCGACACGATCGAGACGGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGA 314971 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 |||||| ||| |||| || ||||| || |||||||||||| | | | | | || || Sbjct 314970 TCAACAGCGTCTGATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTA 314911 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| || || | || |||| |||| || || Sbjct 314910 CAACATCCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGTGG 314860 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 24697 TGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGA 24756 || ||||||||||||||| | || ||||| || || || || ||||| || || || || Sbjct 314266 TGGTACGATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGA 314207 Query 24757 AGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCC 24816 | ||| || | || ||||| || |||||||| || || || || || || || Sbjct 314206 CAGCGGCGATACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCC 314147 Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGA 24876 || || || ||| ||||||| ||||| || |||||||||||| | | | | | || Sbjct 314146 GGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGA 314087 Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| || ||||| |||||||| || | || |||| |||| || || Sbjct 314086 CTACAACATCCAGAAGGAGTCGACACTGCATCTCGTCCTGCGTCTGCGTGGTGG 314033 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24697 TGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGA 24756 || ||||||||||||||| | || ||||| || || || || |||||||| || || || Sbjct 314497 TGGTACGATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGA 314438 Query 24757 AGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCC 24816 | ||||| | ||||| || || ||||| || ||||| || || || || || Sbjct 314437 CTCGGGTGACACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCC 314378 Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGA 24876 || ||||| ||| ||||||| ||||| || |||||||||||| | | | | | || Sbjct 314377 GGACCAACAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGA 314318 Query 24877 TTATAACATTCAAAAGGAATCGAC 24900 || ||||| || ||||| ||||| Sbjct 314317 CTACAACATCCAGAAGGAGTCGAC 314294 >seq1 Length=1189627 Score = 111 bits (122), Expect = 1e-19 Identities = 172/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||||||||| | || || || || ||||| || || |||||||| || || | Sbjct 523758 ACGATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCG 523699 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 |||||| | || || || || |||||||| ||||| || || || ||||| || Sbjct 523698 GGCGACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGAC 523639 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| ||| ||||||| || || || ||||| |||||| | | | | | || || Sbjct 523638 CAACAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTAC 523579 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG 24940 ||||| || ||||| ||||| | ||| | || | || |||| || || | | ||| Sbjct 523578 AACATCCAGAAGGAGTCGACGTTGCACCTCGTCCTCCGTCTGCGTGGTGGTGCCATCGAG 523519 Query 24941 CCAACG 24946 ||| || Sbjct 523518 CCATCG 523513 >seq122 Length=778307 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || ||||||||||| || || | Sbjct 759681 ACCATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATTACGCTCGACGTCGACAGC 759622 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | || || || || |||||||| ||||| || || || || ||||| Sbjct 759621 GGTGACACGATCGAGACCGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCGCCCGAC 759562 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| ||||| || ||||| |||||| | | | | || || Sbjct 759561 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTAC 759502 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || || || ||||| || ||| ||||| |||| Sbjct 759501 AACATCCAGAAAGAGTCGACTCTGCACCTGGTGCTGCG 759464 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||||||||| | || ||||| || || || || || || || || || || | Sbjct 759450 ACGATGCAGATCTTCGTGAAGACGCTCACTGGGAAGACCATCACTCTGGATGTCGATTCT 759391 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | || || || || ||||| || ||||| ||||| || || || || Sbjct 759390 GGTGACACCATCGAGACTGTCAAGGCGAAGATTCAGGACAAGGAAGGCATCCCGCCAGAC 759331 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| |||||||||| ||||| ||||||||||| | | | | | || || Sbjct 759330 CAGCAGCGTCTGATCTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTCGCGGACTAC 759271 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGA 24939 ||||| || ||||| || || || ||| | || | || | || || ||| |||||| Sbjct 759270 AACATCCAGAAGGAGTCCACCCTCCACCTTGTTCTTCGTCTTCGTGGTGGC--AACTGA 759214 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24702 CGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761 ||||||| || || | || ||||| ||||| || || || || ||||| || | | Sbjct 341313 CGATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGT 341254 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | ||||| | || | || || |||||||| ||||| || || || || || || | Sbjct 341253 CGGACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACC 341194 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 |||| ||| |||||||||| || || ||||||||||| | | || | || || | Sbjct 341193 AACAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACA 341134 Query 24882 ACATTCAAAAGGAATCGACACTACAC 24907 |||| || ||||| ||||| || ||| Sbjct 341133 ACATCCAGAAGGAGTCGACGCTGCAC 341108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896672086200