Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq68 208 1e-47 seq13 185 1e-40 seq81 176 7e-38 seq99 104 4e-16 seq37 102 1e-15 >seq68 Length=472887 Score = 208 bits (230), Expect = 1e-47 Identities = 345/498 (69%), Gaps = 25/498 (5%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| || |||||| || ||||| |||||||| || | |||||| Sbjct 102804 GCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCATGGGGACGATGCCGTT 102745 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| |||||| || || | ||||| ||| | ||||||||| |||||| || | Sbjct 102744 CGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACGTTGTGCACGTGGAC 102685 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| ||||||||||||| ||||||||||| ||||| | |||||| ||||||||||| Sbjct 102684 GCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGCGTGTCGTAGATGCC 102625 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 |||||| |||||| ||| | ||| ||| ||||| ||||| |||||||| | ||| Sbjct 102624 CTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGACATTTGCGGGACGGGCGT 102565 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 |||||| ||||| | || || | ||| |||| || ||| | ||||||| | ||| Sbjct 102564 GCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTCTCGGACATGAGGTTGTA 102505 Query 2073837 GG--TGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATG 2073894 | ||| || |||| | | || |||| | | ||||| | Sbjct 102504 CGTTTGGATGGCCGCCGCGATATC-CGACTTG----------------TGGATGCCGACG 102462 Query 2073895 GCGACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTC 2073951 ||||||||||| | ||||| ||| || |||||| ||| | ||||| ||||| | Sbjct 102461 GCGACGCGCATCAGCATGTGCTGTGGGCGCTCGGCGATCTTGCCGTCG---ACCTTCAGC 102405 Query 2073952 AGGTAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGG 2074011 ||||| ||||| ||||||| | ||| || || || | | ||||| |||| | Sbjct 102404 AGGTACGACCGTTCCAGGGTCTTGAAGCCGAAATAGTCAAAGTCGAAATCGCGATCGTAG 102345 Query 2074012 CGGATGGCGGCGTCGAGG 2074029 ||||| | ||||||| Sbjct 102344 ATGATGGACGAGTCGAGG 102327 Score = 190 bits (210), Expect = 3e-42 Identities = 375/543 (69%), Gaps = 20/543 (4%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||| ||||| |||| |||||||| | |||| ||||| | ||||| ||||||||||| Sbjct 104250 TGGTCAACGGTGAACTTGATGGCGTCGACGGCGGGCCGAGATCGCAGGTAGTACATGCCC 104191 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCA---TTC 2069367 ||||||||||| | ||| |||||| ||||||||||| | || | || || Sbjct 104190 GTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAG---CTTGCCAAAGTTA 104134 Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 | ||| || || ||||| ||| || |||||| | ||| |||| ||||| Sbjct 104133 ATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAAGGCGCCGCGATCGGCG 104074 Query 2069428 GCCATGTCGATGGTC-ACG-CGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGA 2069485 |||||||| || | || | | | || |||||| ||||||||| ||||| |||||| Sbjct 104073 GCCATGTCAATCAGCGACTTCTGCTTGAT--CTCCCAAACGGTCTTGTACAGGTCCTTGA 104016 Query 2069486 GATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGC 2069545 ||| | |||| | ||| |||| | ||| ||||| || | ||| || || Sbjct 104015 GATCCTGCGGGAT----TCGG--TCAATGTTCTGGACCGACCCGTTGTGTGCCATCAGCT 103962 Query 2069546 GGTCGCGAAAGTCGGGCGTCC-ACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGG 2069604 ||| ||| |||||| ||||| ||||||| || |||| | | | | |||||| | Sbjct 103961 GGTGGCGCAAGTCGT-CGTCCCACAGGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTG 103903 Query 2069605 TTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACC 2069664 |||| ||||| || || || | ||||| || | || |||||||||||||||| | Sbjct 103902 TTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTTGCTCGTGTACGGC 103843 Query 2069665 TCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACG 2069724 ||| | |||| |||| ||||||||||| || | || |||||||| |||| | Sbjct 103842 TCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGGCATCGGCGCGAGC 103783 Query 2069725 AGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGC-GCCCGCAGGGCGTCCCAGTCCCA 2069783 |||| ||| || |||| ||| | | | || | | ||| ||| |||||||||||||| Sbjct 103782 AGCAACGAATTCCGCATGCCATGCCG-GGCGATATCGGCCTTCAGCGCGTCCCAGTCCCA 103724 Query 2069784 GCG 2069786 || Sbjct 103723 TCG 103721 Score = 104 bits (114), Expect = 4e-16 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 2070010 TAGGGTCCCTCCTTTGCGGCCAGTTGTGCCGACGCCGTCGCCGCCGCATGGTAGATCGTC 2070069 ||||| || ||||| ||||||| | || || || |||||| |||||||||| Sbjct 103647 TAGGGGCCGTCCTTAACGGCCAGATCCTTGGAGGCAGTGCAGGCCGCAAAGTAGATCGTC 103588 Query 2070070 TCAAAGATGGTGCGGTTGAG-GCGACGCG-CGCCGGCGCTCTCCCACGGCAGGTCCATCA 2070127 || |||||| |||||| || ||| |||| | |||||| || |||| |||| Sbjct 103587 TCGAAGATGTCGCGGTTCAGTGCG-CGCGCCTCCGGCG-AGTCGAACGGGTACCGCATCT 103530 Query 2070128 TGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCG 2070187 | || ||||| || |||||||| ||||||| || | |||| ||| |||| ||||| Sbjct 103529 GGATGAAGGCGTCCGCAAGGCCCTGGACGCCGATTCCGACGGGCCTGTGTCGCATGTTCG 103470 Query 2070188 AGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTT 2070242 | | || || |||||||| ||||| | |||| ||||||||| ||| ||||| Sbjct 103469 ATCGGCGCGCTTCGGGCACAGGGTAATAGTTGCCGTCGATCACCTTGTTCAGGTT 103415 Score = 96.9 bits (106), Expect = 5e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 2071800 CAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCG 2071859 ||| |||||||||||| |||||| || | |||||||| | || | | | ||| || | Sbjct 103069 CAGACCGGGCGCCTCGTTCGGGCAGAACAACGACCAGTGGGCGTCGGCCTGCACACGCTG 103010 Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| ||||| ||| |||| ||||||||||| || || || || || | ||| ||||| Sbjct 103009 CATGAACAGATCGGGAATCCAAAGGCCGTAAAACAGGTCACGAGCACGTTCCTCTTCCTT 102950 Query 2071920 GCCGTGGTTCT 2071930 ||||||||||| Sbjct 102949 GCCGTGGTTCT 102939 >seq13 Length=678328 Score = 185 bits (204), Expect = 1e-40 Identities = 200/262 (76%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| |||| || || ||| ||| Sbjct 493578 TGTACTTGGTGACGGCCTTGGTGCCTTCGGAGACGGCGTGCTTGGCGAGCTCACCGGGCA 493637 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT---GTTAG 1485586 ||||||||| || | |||||||||||| | | | ||| | | || ||| ||| Sbjct 493638 GGATCAGGCGGACAGAGGTCTGGATCTCAC--GCGACGA-CAGGGTGGACTTGGAGTTGT 493694 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||||| || ||||||||||| | ||||||| |||| |||||||||| ||||||| Sbjct 493695 AGCGCGCAAGACGGCCGGCCTCCAGGGCGATGCGCTCGAAGATGTCGTTGATGAACGAGT 493754 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||||| | | ||||| ||| ||||||||| |||||||| || |||| Sbjct 493755 TCATGATGGACATGGCGCGGCGCGAGATACCCGTGTCGGGGTGGACCTGCTTCAGGACCT 493814 Query 1485707 TGTAAACAAAGGACGAGTACGA 1485728 |||| | | | || |||||| Sbjct 493815 TGTAGATGTACGTCGCGTACGA 493836 >seq81 Length=417576 Score = 176 bits (194), Expect = 7e-38 Identities = 198/262 (76%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || |||||||||||| |||| ||||| ||| ||| Sbjct 276560 TGTACTTGGTGACCGCCTTGGTGCCTTCCGAGACGGCGTGCTTGGCGAGTTCACCGGGCA 276619 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT---GTTAG 1485586 |||||| || |||| |||||||||||||| | | ||| | || | ||| ||| Sbjct 276620 GGATCAGACGGACGGAGGTCTGGATCTCGC--GCGACGACAGCGTCG-ACTTGGAGTTGT 276676 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||||| ||||| |||||||| | ||||| |||| |||||||||| ||||||| Sbjct 276677 AGCGCGCAAGGCGCCCGGCCTCAAGCGCAATGCGCTCGAAGATGTCGTTGATGAACGAGT 276736 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||||| | | ||||| ||| ||| ||||| |||||||| || |||| Sbjct 276737 TCATGATGGACATGGCACGGCGCGAGATACCCGTGTCAGGGTGGACCTGCTTCAGGACCT 276796 Query 1485707 TGTAAACAAAGGACGAGTACGA 1485728 |||| | | | || |||||| Sbjct 276797 TGTAGATGTACGTCGCGTACGA 276818 >seq99 Length=174244 Score = 104 bits (114), Expect = 4e-16 Identities = 110/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 431097 GGCGGGC-GCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCA 431155 ||| ||| | || ||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct 48678 GGCCGGCAGAGAAGGTATCGTCGACACGGCCGTCAAGACCGCCGAGACCGGCTACATCCA 48737 Query 431156 GCGTCGGTGCATCAAATCGATGGAGAGCCTGCAGATCAAGCGCGGCGGCCTCGTGCGCAA 431215 ||| || | |||| | |||||| | | ||||||| || |||| |||||| || Sbjct 48738 GCGGCGCCTCGTCAAGGCCATGGAGGACGTCATGATCAAGTACGACGGCACCGTGCGGAA 48797 Query 431216 CGCCAACGGCGACATTGTCCAGTT 431239 | || || ||||| ||||||| Sbjct 48798 CAGCATGGGTGACATCATCCAGTT 48821 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 || ||||| || ||||| |||||| | ||||| ||||||||||||||||||||| Sbjct 47611 ACGTTCCGTCTTAACCTCAGTGTGACGTCGCCGTACAATGCCGACTTTGACGGCGACGAG 47670 Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAG 429735 ||||||||||||||||| ||||||| | | | | ||||||| Sbjct 47671 ATGAACCTGCACGTGCCGCAGTCGGTGGAGACGAGAGCCGAAG 47713 >seq37 Length=5730 Score = 102 bits (112), Expect = 1e-15 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 1217395 TGCACCGCGACCTCAAGAGCAGCAACCTGTTGGTCGACGACAATTTCACGATCAAGGTGG 1217454 ||||| | ||||| |||| | ||||| |||||||| ||| | ||||||| | Sbjct 4887 TGCACAGGGACCTGAAGACCGATAACCTCCTGGTCGACCGCAACTGGGTCGTCAAGGTCG 4946 Query 1217455 CCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGCGAC-GATGACCCGGTGCGGCACG 1217513 ||||||||||| | | || ||| || || || | || |||||| | | ||| ||| Sbjct 4947 CCGACTTTGGCCTGACGCGGTTCCTGGACGAGAA-GAAACAGATGACGCAGGTCGGGACG 5005 Query 1217514 CCGGCGTGGACGGCGCCCGAGATCCTGC-GCGGCGAGCGCTACTCGGAAAAGGCCGACAT 1217572 || |||| | |||||||| | |||| ||||| ||| |||| ||||||||| | Sbjct 5006 CCAATCTGGATGTCGCCCGAGGT-CTGCATGGGCGACAAGTACACGGAGAAGGCCGACGT 5064 Query 1217573 CTACTCTTTCGGCATCGTCATGTGGGAGATCATCACGCGCAAGCAGCCCTAT 1217624 ||| | ||||||||| |||||||||||||||| || || || | || ||| Sbjct 5065 GTACGCGTTCGGCATCATCATGTGGGAGATCATGACCCGGCAGGAACCGTAT 5116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916228848197435