Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq112 107 4e-18 seq122 91.5 3e-13 >seq112 Length=800634 Score = 107 bits (118), Expect = 4e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 82577 TCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATA 82636 ||| | ||| || | || |||||| || | ||||| || || || ||||| || || || Sbjct 314026 TCAGCGACCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTA 314085 Query 82637 ATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATC 82696 || | || | | ||| || || || || || || || ||||| || | || || || Sbjct 314086 GTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 314145 Query 82697 TGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG 82756 || || || || |||||||| || ||||| || || || | || |||||||| Sbjct 314146 CGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCT 314205 Query 82757 TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || |||| || ||||||||||| |||| |||||| || || |||||||| Sbjct 314206 GTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || | ||||| || || || ||||| || || || || | Sbjct 315089 TACCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCG 315148 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || || |||||||| || | || || || || | Sbjct 315149 CCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCG 315208 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| || ||||| || || || | || ||||| || || | Sbjct 315209 GGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCA 315268 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 315269 CATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 >seq122 Length=778307 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || || || || | || | | ||| Sbjct 341097 CGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCG 341156 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | ||||| || || || || || ||||| Sbjct 341157 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTG 341216 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || ||||| || | | || || | || ||| Sbjct 341217 TCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATC 341276 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | |||||| || ||||| ||||| Sbjct 341277 GTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 341311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825124355935