Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq112 105 4e-18 seq122 98.7 7e-16 >seq112 Length=800634 Score = 105 bits (116), Expect = 4e-18 Identities = 169/240 (70%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 33516 ATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTA 33575 ||||| |||||| | || ||| | || | ||| || || ||| || || |||||||| Sbjct 314854 ATCGT-ACCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTA 314912 Query 33576 ATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 |||| ||| ||||| | || |||| || |||||||| ||||||| |||||| ||||| Sbjct 314913 GTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATC 314972 Query 33636 TTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG---GTGTCGCT 33692 | || | || || ||||| ||| || ||| | | ||| || ||||||| Sbjct 314973 AGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTGACC---GTCTCGATCGTGTCGCC 315029 Query 33693 TGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||| || || || | ||||| || || || || | ||| || || ||||||||||| || Sbjct 315030 TGAGTCGACATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATCGT 315089 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 33516 ATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTA 33575 ||||| |||||| | || ||| | || | ||| | || ||| || || |||||||| Sbjct 314258 ATCGT-ACCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTA 314316 Query 33576 ATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 |||| ||| ||||| | || |||| || || ||||| || |||| |||||| || || Sbjct 314317 GTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTC 314376 Query 33636 TTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTG 33694 | || | ||| || ||||| ||| || |||| || || | ||||| | | Sbjct 314377 CGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTCA-CAGTTTCGATCGTGTCACCCG 314435 Query 33695 ATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || ||||||| ||| || || || ||||| | ||| || || ||||||||||| || Sbjct 314436 AGTCGACGTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCATCGT 314493 >seq122 Length=778307 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | ||| ||||| |||| |||| || Sbjct 759245 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGC 759304 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| |||| ||||||||| ||| |||| | ||||| ||||| ||| ||| Sbjct 759305 TTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTC 759364 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | || || | |||||| | || || || || | ||||| || || || || Sbjct 759365 GCCTTGA-CAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGT 759423 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTT 33753 | ||| || || ||||||||||| ||| Sbjct 759424 GAGCGTCTTCACGAAGATCTGCATCGTT 759451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703338996800