Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq122 102 2e-16 seq112 98.7 2e-15 >seq122 Length=778307 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || || | || || || || |||||| |||| | Sbjct 759663 AAGACCCTGACGGGCAAGACCATTACGCTCGACGTCGACAGCGGTGACACGATCGAGACC 759604 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| ||| ||| || | || |||||| Sbjct 759603 GTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAGCAGCGCCTGATCTTC 759544 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || |||||| | || | ||||| |||||| ||||||||||||| Sbjct 759543 GCCGGCAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTACAACATCCAGAAAGAGTCG 759484 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || | ||||| Sbjct 759483 ACTCTGCACCTGGTGCTGCGTCTTCG 759458 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | || || ||||| ||||| ||||||||||||| || ||||| || | || Sbjct 759458 CGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTG 759517 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||| || |||||||| ||||||||||| || || || || Sbjct 759518 CGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTG 759561 >seq112 Length=800634 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206195 CAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAA 206254 |||| || || ||||| ||||| || || ||||| |||| | || ||| | Sbjct 314696 CAGGGAAGACCATCACATTGGATGTCGACTCAGGCGACACGATCGAGACGGTGAAGGCCA 314637 Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 ||||||| || || || || || || || || | || ||||||||||| |||| Sbjct 314636 AGATTCAGGATAAGGAGGGTATCCCTCCTGATCAACAGCGTCTGATCTTCGCCGGCAAGC 314577 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||| ||||| | || ||||||||||||||| ||||||| ||||| || |||||| Sbjct 314576 AGTTGGAGGATGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAGTCGACACTTCAC 314518 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || ||||| || |||| ||||| || || Sbjct 314256 CAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGCGAT 314197 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| | || ||| ||||| || || || || || || ||||||| || Sbjct 314196 ACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCAGCAG 314137 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || | ||||| |||||| || Sbjct 314136 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATC 314077 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 314076 CAGAAGGAGTCGACACTGCATCTCGT 314051 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| ||||| || || || || | || || || |||| Sbjct 314487 CAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGACTCGGGTGAC 314428 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| | || ||| |||||||| || || || || ||| |||||| || Sbjct 314427 ACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAACAG 314368 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || | ||||| |||||| || Sbjct 314367 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATC 314308 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || | || || ||| || | || || Sbjct 314307 CAGAAGGAGTCGACGTTGCATCTCGTTCTGCGTCTGCG 314270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181818301556965