Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq68 199 4e-46 >seq68 Length=472887 Score = 199 bits (220), Expect = 4e-46 Identities = 368/532 (69%), Gaps = 11/532 (2%) Strand=Plus/Minus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCGCC-- 147941 ||||||| |||||||| ||||| | ||| ||||| | ||| || || || || ||||| Sbjct 102862 AGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCCCTTGCGTTTCCCGCCGC 102803 Query 147942 -CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 ||||||||| | ||| | ||| | |||||||| | |||||| | | |||| ||| Sbjct 102802 CCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCATGGGGACGATGCCGTTCG 102743 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 |||||||| || | || | | |||| ||| ||||| | |||||||| |||| Sbjct 102742 ACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACGTTGTGCACGTGGACGC 102683 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 ||||||||||| | |||| || ||| ||||| |||| || || ||||||||| | Sbjct 102682 CAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGCGTGTCGTAGATGCCCT 102623 Query 148121 CGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 ||||| |||||| |||| |||| | || || || || |||||||||| | |||| Sbjct 102622 CGATGGAGTCGTTCTTGAGCGCC-ACCAGGAAGCAGGACGACATTTGCGGGACGGGCGTG 102564 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || ||| | ||| || ||||||||| ||| | || | ||| | | ||| Sbjct 102563 CCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTCTCGGACATGAGGTTGTAC 102504 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCC--GTGAATGCCCAGCGCGACGCGCATGAGCA 148297 || | || || | |||| || || | ||| ||||| | ||||||||||| |||| Sbjct 102503 GTTTGGATGGCCGCCGCGATATC--CGACTTGTGGATGCCGACGGCGACGCGCATCAGCA 102446 Query 148298 TGTGCTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 |||||||||| || ||||| | |||| || || ||| || || || ||| ||| Sbjct 102445 TGTGCTGTGGGCGCTCGGCGATCTTG-CCGTCGACCTTCAGCAGGTACGACCGTTCCAGG 102387 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| | || || || | | || ||||| | ||||| ||||| || Sbjct 102386 GTCTTGAAGCCGAAATAGTCAAAGTCGAAATCGCGATCGTAGATGATGGACG 102335 Score = 149 bits (164), Expect = 6e-31 Identities = 733/1153 (64%), Gaps = 28/1153 (2%) Strand=Plus/Minus Query 146680 TTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGT 146739 || |||||||| || || ||||| ||| ||| ||||| ||||| ||||||| ||| Sbjct 104115 TTGAACGATTGCGACTGGTCAATGAAGGCGCCGCGATCGGCGGCCATGTCAATCA-GCGA 104057 Query 146740 TTTGT-CTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTC 146798 || | ||| || |||||| |||| |||||||| |||| | | || || | || Sbjct 104056 CTTCTGCTTGATCTCCCAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTC 103997 Query 146799 AATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAA-A 146857 |||||| || | || || ||||| || | | || || | ||| ||| | | Sbjct 103996 AATGTTCTGGACCGACCCGTTGTGTGCCATCAGCTGGTGGCGCAAGTCGT-CGTCCCACA 103938 Query 146858 GGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCA 146917 || | || || ||||| | | | | || |||| || ||||| || |||| Sbjct 103937 GGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCA 103878 Query 146918 GCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATA 146977 |||||||||| || | ||||| ||| | ||||| || |||| || || || | | Sbjct 103877 GCACACGTCTCGCGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGA 103818 Query 146978 TTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACG 147037 | ||| || | || || ||||| ||| | || ||| ||||| |||| || | | Sbjct 103817 TCTGGCTGGTTGACGCTGTGGGCATCGGCGCGAGCAGCAACGAATTCCGCATGCCATGCC 103758 Query 147038 CACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACA 147097 ||| | | |||||| | | ||||||||| |||||| ||| | || ||||||| Sbjct 103757 GGGCGATATCGGCCTTCAGCGCGTCCCAGTCCCATCGCGACGACGGCTTTACATTCCACA 103698 Query 147098 TGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGT 147157 ||||| ||||||| | || | || || ||||||| ||||| |||| |||| Sbjct 103697 TGTCGAACTGGAGAATGCCCTGGGACGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGT 103638 Query 147158 CGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTT 147217 | |||| || | || | || || |||| || || ||| ||| | Sbjct 103637 CCTTAACGGCCAGATCCTTGGAGGCAGTGCAGGCCGCAAAGTAGATCGTCTCGAAGATGT 103578 Query 147218 GTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCAT 147277 ||| || || ||| || ||| | || |||| | | ||||| | Sbjct 103577 CGCGGTTCAGTGCGCGCGCCTCCGGCGAGTCGAACGGGTACCGCATCTGGATGAAGGCGT 103518 Query 147278 CGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGC----TTTTCGTT-GCTGCGCTT 147332 | || | ||||||| |||| |||| || | || | |||| | | |||||| Sbjct 103517 CCGCAAGGCCCTGGACGCCGATTCCGACGGGCCTGTGTCGCATGTTCGATCGGCGCGCTT 103458 Query 147333 CGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAAC 147392 || || | || || | ||||| || || | |||||| ||||| || |||| Sbjct 103457 CGGGCACA-----GGGTAATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAGT 103403 Query 147393 TTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTG 147452 | || | | || || | ||| || | || |||| ||| | || ||| Sbjct 103402 GTACGTCACGTCGTACAGCTTATGGAAGTCGAACGTGGCGTCAGTGAC--GAAC---TTG 103348 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTC-TTCGGCGTCGCTGTACTGCA 147511 | || ||||| |||||||| ||||||||||||||||| | || || || |||||| | Sbjct 103347 GA-CAGTGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACG-TGTACTCGA 103290 Query 147512 CGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCC 147571 ||||||| | ||||||||| |||| || || |||| || | ||| || || | Sbjct 103289 CGATTTCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGC 103230 Query 147572 GATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGA 147631 ||||| ||||| ||| | | |||||| || || || ||||| || | || | || Sbjct 103229 TGTTGCAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTGGGCCTCCAGGA 103170 Query 147632 T---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGT 147688 | |||| |||||||||||| | | | || || | ||||||||||| || | Sbjct 103169 TCGCGAACC---ACAGGTCCTGCGCCCTGATCGTCTTACGTTGCCGGCCCTCGTTCTCAT 103113 Query 147689 ACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGAT 147748 | || ||| ||| | | ||||||||||| || || || || ||||| || | Sbjct 103112 AGCGTTCGAACAGCGCAGCGAACTCGTCGCCCCAGACGTCCGCCAGACCGGGCGCCTCGT 103053 Query 147749 GCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCA 147808 ||| || | || |||||| | |||| || | || || |||| |||||||| || | Sbjct 103052 TCGGGCAGAACAACGACCAGTGGGCGTCGGCCTGCACACGCTGCATGAACAGATCGGGAA 102993 Query 147809 CCCACAGCGCGTA 147821 ||| || |||| Sbjct 102992 TCCAAAGGCCGTA 102980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610216989400