Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq68 194 2e-43 seq13 156 6e-32 seq81 150 3e-30 seq37 95.1 2e-13 seq101 93.3 6e-13 seq99 93.3 6e-13 seq144 86.0 9e-11 >seq68 Length=472887 Score = 194 bits (214), Expect = 2e-43 Identities = 379/544 (70%), Gaps = 22/544 (4%) Strand=Plus/Plus Query 262876 CGCTGGGACTGGGACGCACTGCGGGCGTCGGT-TCGACAG-CATGGCCTGCGCAACTCGT 262933 || |||||||||||||| ||| ||| || | ||| | | |||||| |||| || |||| Sbjct 103721 CGATGGGACTGGGACGCGCTGAAGGC--CGATATCGCCCGGCATGGCATGCGGAATTCGT 103778 Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| | |||| |||||||| || | || ||||||||||| |||| |||| | Sbjct 103779 TGCTGCTCGCGCCGATGCCCACAGCGTCAACCAGCCAGATCCTGGGGAACAACGAGTGCT 103838 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 ||||| |||||||||||||||| || | || ||||| | || || || ||||| Sbjct 103839 TCGAGCCGTACACGAGCAACATCTACGCGAGACGTGTGCTGGCTGGTGAGTTCACCGTCA 103898 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGT-GGACGCCCGACTTTCGC 263112 ||||| |||||| | | | || | || ||||||| ||||| |||||| ||| Sbjct 103899 TCAACAAGCACCTGCTGGTGGACCTGATCAACCGGGGCCTGTGGGACG-ACGACTTGCGC 103957 Query 263113 GACCGGCTCATTGCGGCAC-AGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCC 263171 ||| ||| || || ||| | || ||||| ||| | ||||| ||| | |||| Sbjct 103958 CACCAGCTGATGGC-ACACAACGGGTCGGTCCAGAACATTGAC--CGA----ATCCCGCA 104010 Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGG--GT-GACCATTGA 263228 |||||||||| || | ||||||||| |||||| | ||| | | || | ||||| Sbjct 104011 GGATCTCAAGGACCTGTACAAGACCGTTTGGGAGAT---CAAGCAGAAGTCGCTGATTGA 104067 Query 263229 TATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGC 263288 ||||| ||||| |||| ||| | |||||| || ||| ||||| | || | | Sbjct 104068 CATGGCCGCCGATCGCGGCGCCTTCATTGACCAGTCGCAATCGTTCAACGTCCACATGAC 104127 Query 263289 CGAC-CCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347 |||| || | ||| | ||||||||||| ||| || ||| | ||||||| Sbjct 104128 CGACATTAACTTTGGCAAGC-TGACGTCGATGCATTTCTACGCCTGGACTAAAGGCCTCA 104186 Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407 |||| ||||||||||| ||||| | |||||||| | | ||||||| | |||||||| | Sbjct 104187 AGACGGGCATGTACTACCTGCGATCTCGGCCCGCCGTCGACGCCATCAAGTTCACCGTTG 104246 Query 263408 ATCA 263411 | || Sbjct 104247 ACCA 104250 Score = 188 bits (208), Expect = 1e-41 Identities = 217/292 (74%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| || ||| |||||| ||| | || || | || || ||||||||||| Sbjct 102513 CATGTCCGAGAAGTGGTTCACGCACGCGTCCCCGACCATGTTCAACGCCGGCACGCCCGT 102572 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 |||||| | ||||| ||||| ||| ||| | ||| ||| || |||||||||||||| Sbjct 102573 CCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCAAGAACGACTCCATCGAGGGCATCTA 102632 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||| | ||||| ||||||||||| ||||||||||||| || | || Sbjct 102633 CGACACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCCACGT 102692 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| ||||||||| | ||| ||||| | || || |||||| ||| |||||| | Sbjct 102693 GCACAACGTGCGCGCCACCGGCTCCTACATTCGTGGTACGAACGGCACGTCGAACGGCAT 102752 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || |||||||||||||| || |||||| || ||||||||||||||| || Sbjct 102753 CGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACGTCGACCAGGGC 102804 >seq13 Length=678328 Score = 156 bits (172), Expect = 6e-32 Identities = 187/250 (75%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||| || | | ||||||||||| || |||||||| |||||| || | | | Sbjct 493836 TCGTACGCGACGTACATCTACAAGGTCCTGAAGCAGGTCCACCCCGACACGGGT-----A 493782 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | ||||||| |||||||||||||| |||||||||| |||| |||||| Sbjct 493781 TCTCGCGCCGCG-CCATGTCCATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATC 493723 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC---AAGCGCAACACGATCGGCACGCGC 725072 | | |||||||| || || ||||||| |||| ||| || | | ||| | ||| Sbjct 493722 GCCCTGGAGGCCGGCCGTCTTGCGCGCTACAACTCCAAGTCCACCCTG-TCGTC--GCGT 493666 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 |||||||||||| | || ||||||||| ||| ||| || || |||| ||||||||||||| Sbjct 493665 GAGATCCAGACCTCTGTCCGCCTGATCCTGCCCGGTGAGCTCGCCAAGCACGCCGTCTCC 493606 Query 725133 GAGGGCACCA 725142 || ||||||| Sbjct 493605 GAAGGCACCA 493596 >seq81 Length=417576 Score = 150 bits (166), Expect = 3e-30 Identities = 186/250 (74%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||| || | | ||||||||||| || |||||||| ||||| || | | | Sbjct 276818 TCGTACGCGACGTACATCTACAAGGTCCTGAAGCAGGTCCACCCTGACACGGGT-----A 276764 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | ||||||| |||||||||||||| |||||||||| |||| ||||| Sbjct 276763 TCTCGCGCCGTG-CCATGTCCATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATT 276705 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC---AAGCGCAACACGATCGGCACGCGC 725072 | |||||||| ||||| ||||||| |||| ||| | || | ||| | |||| Sbjct 276704 GCGCTTGAGGCCGGGCGCCTTGCGCGCTACAACTCCAAGT-CGACGCTGTCGTC--GCGC 276648 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 |||||||||||| |||| || |||||| ||| ||| ||||| |||| |||||||||||| Sbjct 276647 GAGATCCAGACCTCCGTCCGTCTGATCCTGCCCGGTGAACTCGCCAAGCACGCCGTCTCG 276588 Query 725133 GAGGGCACCA 725142 || ||||||| Sbjct 276587 GAAGGCACCA 276578 >seq37 Length=5730 Score = 95.1 bits (104), Expect = 2e-13 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 1152857 ATGATCTCCCACATGACGACGCCAAACGAGTAGACATCGGCCTTTTCCGAATACTTTTCG 1152916 |||||||||||||||| || ||| |||| ||| || |||||||| |||| ||||| ||| Sbjct 5097 ATGATCTCCCACATGATGATGCCGAACGCGTACACGTCGGCCTTCTCCGTGTACTTGTCG 5038 Query 1152917 CCGCGCAAGATCTCGGGCGCCGTCCACGCCGGCGTGCCGCAGCGGGTCATC-GTCGCATT 1152975 || ||| |||||||| | |||| ||||| ||| | |||||| || | || Sbjct 5037 CCCATGCAGACCTCGGGCGACATCCAGATTGGCGTCCCGACCTGCGTCATCTGTTTC-TT 4979 Query 1152976 GTCCTGGCGGATGCGGGCAAAGCCAAAGTCGGCCACCTTGACGGTGAAATTGTCGTCGAC 1153035 || | ||| || | | |||||||||||| ||||||||| | ||| |||||| Sbjct 4978 CTCGTCCAGGAACCGCGTCAGGCCAAAGTCGGCGACCTTGACGACCCAGTTGCGGTCGAC 4919 Query 1153036 GAGCAGGTT 1153044 || ||||| Sbjct 4918 CAGGAGGTT 4910 >seq101 Length=873781 Score = 93.3 bits (102), Expect = 6e-13 Identities = 151/210 (72%), Gaps = 12/210 (6%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCC-GCTACCAGCG 1455774 ||||| ||||| || ||||||||||| || ||||| ||||||||| || || | Sbjct 440013 GAGCCCATGCTGATGGAGAACCCGAACCGGTTCGTCCTCTTCCCCATCGAGCATTCATCC 439954 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 | | ||||| |||||| | ||| | || || || |||||||| || ||| | |||| Sbjct 439953 GTT-TGGGAGATGTACAAGAAACAT-GTCGCATCGTTCTGGACCGCGGAAGAGATTGACC 439896 Query 1455835 TCGGCGCCG----ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 | | ||| ||| || | |||| | |||| | ||| |||||| | ||||||||| Sbjct 439895 T-GTCGCAAGATCACAAGG---ATTGGGCGGCGCTTAACGATGACGAGAGACATTTCATC 439840 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAG 1455920 ||| ||||||| ||||| ||| ||||| || Sbjct 439839 AAGAACGTCCTGGCCTTCTTT-GCCGCAAG 439811 >seq99 Length=174244 Score = 93.3 bits (102), Expect = 6e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 1816049 CCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAGGCCGCCG 1816108 ||||| |||| || ||||||| ||||| || || ||| |||||| |||| || Sbjct 48839 CCGTCCTCGCCGTACAGGAACTGGATGATGTCACCCATGCTGTTCCGCACGGTGCCGTCG 48780 Query 1816109 CGCTTGATCTGCAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC-C 1816167 ||||||| | | |||||| | ||||| | || |||||||||||||| ||| | Sbjct 48779 TACTTGATCATGACGTCCTCCATGGCCTTGACGAGGCGCCGCTGGATGTAGCCG-GTCTC 48721 Query 1816168 GGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCG 1816207 |||||||||||||||||||||||| | || || | |||| Sbjct 48720 GGCGGTCTTGACGGCCGTGTCGACGATACCTTCTCTGCCG 48681 >seq144 Length=755806 Score = 86.0 bits (94), Expect = 9e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 332921 GACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGG 332980 ||||| |||||||| |||||||| || ||||| | | || | ||||| ||| || Sbjct 698228 GACGTATTGCAGGCAAGGGCAAAGCGGGTCGTGTCCGAATAGATCTCCATCGTCCGACGA 698169 Query 332981 AGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGG 333040 || ||||| || || || | ||| | | ||||||||||||||| ||||| |||||||| Sbjct 698168 AGCGCCTGCTGCGCTGCGGACGTCATACTGTCGGCCTCGTCGAGAATGATAATCTTGTGC 698109 Query 333041 CG 333042 || Sbjct 698108 CG 698107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177795285446730