Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq68 158 1e-33 seq122 134 1e-26 seq112 123 3e-23 seq1 107 2e-18 >seq68 Length=472887 Score = 158 bits (174), Expect = 1e-33 Identities = 320/466 (69%), Gaps = 13/466 (3%) Strand=Plus/Plus Query 7525 TACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTG 7584 ||| || |||| || ||||| | ||| || || || ||||||||| ||||||| Sbjct 102400 TACCTGCTGAAGGTCGACGGCAAGATCGCCGAGCGCCCACAGCACATGCTGATGCGCGTC 102459 Query 7585 GCGGTGGGCATTCAC--GGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGT 7642 || || ||||| ||| | || || || | || ||| | |||||||| | | |||| Sbjct 102460 GCCGTCGGCATCCACAAGTCG--GATATCGCGGCGGCCATCCAAACGTACAACCTCATGT 102517 Query 7643 CTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTC 7702 | ||| ||| |||||||| || || |||||||| ||| ||||| || || | Sbjct 102518 CCGAGAAGTGGTTCACGCACGCGTCCCCGACCATGTTCAACGCCGGCACGCCCGTCCCGC 102577 Query 7703 AATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAA-GACAGCATCGACGGCATTTACAAC 7761 || |||| || || || || | | | | ||| ||| |||||| ||||| ||| || Sbjct 102578 AAATGTCGTCCTGCTTCCTGGTGGCGCT-CAAGAACGACTCCATCGAGGGCATCTACGAC 102636 Query 7762 ACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAAC 7821 ||||||||||| ||||||| || ||||| | | |||||| || || | |||| || Sbjct 102637 ACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCCACGTGCAC 102696 Query 7822 GACGTGCGCGCCAACGGTAGCCGCA-TCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGA 7880 |||||||||||| ||| | || ||||| || ||||| | | | ||| | | Sbjct 102697 AACGTGCGCGCCACCGGCTCCTACATTCGTG-GTACGAACGGCACGTCGAACGGCATCGT 102755 Query 7881 GCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGG----GGGAAAGC 7936 |||||| | ||||||||| || | | || | || |||||||| |||||| | Sbjct 102756 CCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACGTCGACCAGGGCGGCGGGAAA-C 102814 Query 7937 GCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACAT 7982 |||| ||||| ||| | || |||| ||||||||||||||||| Sbjct 102815 GCAAGGGCGCGTTCGCCGTGTACCTGGAACCGTGGCACGCGGACAT 102860 Score = 145 bits (160), Expect = 8e-30 Identities = 611/953 (64%), Gaps = 34/953 (4%) Strand=Plus/Plus Query 8253 CGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAG 8312 |||||| || | ||| |||||| ||||||| |||||||||||| ||| || || | Sbjct 103186 CGAAACGGGGACGCCCTACATGATGTACAAGGACGCTTGCAACAGCAAGTCGAACCAGAA 103245 Query 8313 CAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCC 8372 ||| |||| || || |||| || |||||| | ||||| || |||||| || | Sbjct 103246 GAACCTGGGGACGATCAAGAGCAGTAACCTGTGCACGGAAATCGTCGAGTACACGTCGGC 103305 Query 8373 CGACGAAGTGGCCGTTTGCAATCTAGCGTCGGT----GTGTTTAAACGCGTTCGTTGATC 8428 ||||| |||||| ||||| || |||||| | ||| || ||||| | | Sbjct 103306 GGACGAGACGGCCGTCTGCAACCTGGCGTCGATCGCACTGTCCAA----GTTCG-TCACT 103360 Query 8429 GACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGT-GACGGT-ACG 8486 ||||| ||| | |||||| | | || ||| |||| | || || || ||| Sbjct 103361 GACGC-----CACGTTCGACTTCCATAAGCTG---TACGACGTG-ACGTACACTGTAACG 103411 Query 8487 C--AATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCG 8544 | || | | | || || | ||| | ||| || || ||||||||| |||| Sbjct 103412 CTGAACCTGAACAAGGTGATCGACGGCAACTATTACCCTGTGCCCGAAGCGCGCCGATCG 103471 Query 8545 AACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATG 8604 |||||||| ||||| ||||| || | ||||| || || || || ||||| || | | Sbjct 103472 AACATGCGACACAGGCCCGTCGGAATCGGCGTCCAGGGCCTTGCGGACGCCTTCATCCAG 103531 Query 8605 TTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACG 8664 |||| ||| | ||| | || |||||| || ||| | || || ||| Sbjct 103532 ATGCGGTACCCGTTCGACTCGCCGGAGGCGCGCGCACTGAACCGCGACATCTTCGAGACG 103591 Query 8665 GTGTA--TTACGGC--GCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTA 8720 | || || |||| ||| | ||| | | || ||| | ||| | || Sbjct 103592 ATCTACTTTGCGGCCTGCACT----GCCTCCAAGGATCTGGCCGTTAAGGACGGCCCCTA 103647 Query 8721 CGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGT 8780 ||| |||| | | |||||||| || || || || | || | ||||||||||||||| Sbjct 103648 CGAGTCGTTCCCTGGCAGCCCGGCGTCCCAGGGCATTCTCCAGTTCGACATGTGGAATGT 103707 Query 8781 CACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTT 8840 | ||| | || ||| | ||| || |||| | | || || | || | Sbjct 103708 AAAGCCGTCGTCGCGATGGGACTGGGACGCGCTGAAGGCCGATATCGCCCGGCATGGCAT 103767 Query 8841 GCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAA 8900 ||| |||||| || || | || |||||||| || | || || || |||| || Sbjct 103768 GCGGAATTCGTTGCTGCTCGCGCCGATGCCCACAGCGTCAACCAGCCAGATCCTGGGGAA 103827 Query 8901 CAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGA 8960 |||||| | ||| ||||||| ||| | |||| | |||| |||||| ||| |||| || || Sbjct 103828 CAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGCGAGACGTGTGCTGGCTGGTGA 103887 Query 8961 TTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTTACGACGA 9020 || | | || || || || ||| ||||| | |||| | | ||||| Sbjct 103888 GTTCACCGTCATCAACAAGCACCTGCTGGTGGACCTGATCAACCGGGGCCTGTGGGACGA 103947 Query 9021 CAAAATGCGCGATGCCA--TCGTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTG 9078 | | ||||| | ||| | ||| | |||||| || |||||||||||| | Sbjct 103948 CGACTTGCGCCA--CCAGCTGATGGCACACAACGGGTCGGTCCAGAACATTGACCGAATC 104005 Query 9079 CCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATC 9138 || || | | || || ||||| || ||||||||||| || ||||| | ||||||| Sbjct 104006 CCGCAGGATCTCAAGGACCTGTACAAGACCGTTTGGGAGATCAAGCAGAAGTCGCTGATT 104065 Query 9139 GGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGT 9191 | |||||| || ||| | ||||| || ||||| ||| ||||| || ||||| Sbjct 104066 GACATGGCCGCCGATCGCGGCGCCTTCATTGACCAGTCGCAATCGTTCAACGT 104118 >seq122 Length=778307 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| ||||| || ||||| || |||||||||||| | | ||| | ||| || Sbjct 341103 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCC 341162 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| |||| |||||| || || ||||| ||||| || || || || Sbjct 341163 AGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 341222 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || || | ||||| ||||| |||| ||||| || || || || Sbjct 341223 ATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTG 341282 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| |||||||| Sbjct 341283 CCGGTAAGCGTCTTGACGAATATTTGCAT 341311 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| || ||||||||||| | | ||| | ||| || Sbjct 759239 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCC 759298 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| |||| ||||||||| || ||||| |||||||| || || ||| Sbjct 759299 AGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGA 759358 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| | || | ||||| || || || || ||||| ||||| || Sbjct 759359 ATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTC 759418 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| || ||||| Sbjct 759419 CCAGTGAGCGTCTTCACGAAGATCTGCAT 759447 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || |||| ||| ||||| || || || || || || |||||||||||| Sbjct 759450 TTCCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGG 759509 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| | || |||||||| ||||| || || |||| |||||||| ||||||| Sbjct 759510 CAAGCGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCG 759569 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT-TCC 134663 | || || || || || || || || || || | || | ||||| || | || Sbjct 759570 GAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTC-ACCGCTGTCG 759628 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| |||||||| || || || | || || ||||| || ||||| Sbjct 759629 ACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 759678 >seq112 Length=800634 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||| || ||||| || ||||| || |||||||||||| | | |||| || Sbjct 314869 AGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 314928 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || ||||||| |||||| ||||| || || ||||| || Sbjct 314929 CCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCC 314988 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||||| || | |||||| || || || || | || Sbjct 314989 TTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTG 315048 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || ||||| || ||||| Sbjct 315049 ATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 Score = 122 bits (134), Expect = 9e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||||| || ||||| || ||||| ||||||||||||| ||||| | ||| | Sbjct 315100 AGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGC-GTGCG 315158 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| ||||| |||| ||||||||| || ||||| ||||| || Sbjct 315159 CCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTC 315218 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT-TCCACGTCGAGAG 134673 || || || || || || |||| || | ||||| | || | ||||| || || | Sbjct 315219 CTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTC-GCCGCTGTCCACATCCAGCG 315277 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || || || | || || ||||| || ||||| Sbjct 315278 TAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||| || || || || ||||| || |||||||||||| | | |||| || Sbjct 314042 AGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 314101 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| ||||||||| || ||||| ||||| || Sbjct 314102 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 314161 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT-TCCACGTCGAGAGT 134674 || || || || || || |||| || | || || | || | |||||||| || || Sbjct 314162 TTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATC-GCCGCTGTCCACGTCCAGTGT 314220 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || || | || || ||||| || ||||| Sbjct 314221 AATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||| || | ||| || ||||| || |||||||||||| | | |||| || Sbjct 314273 AGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 314332 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||| || || || || || || || Sbjct 314333 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCC 314392 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || | || | ||||| ||| || ||||| || ||| Sbjct 314393 TTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGCGTA 314452 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || ||||| || ||||| Sbjct 314453 ATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 314490 >seq1 Length=1189627 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| | ||| || ||||| || |||||||||||| | | ||| | || ||| Sbjct 523547 ACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCG 523606 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| |||||| || || || || || || || || || || Sbjct 523607 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGG 523666 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| | || | |||||| ||| || || ||||| || || || ||| Sbjct 523667 ATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTA 523726 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| || ||||| Sbjct 523727 CCCGTCAGGGTCTTCACGAAGATCTGCAT 523755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397357615800