Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq68 123 3e-23 >seq68 Length=472887 Score = 123 bits (136), Expect = 3e-23 Identities = 284/424 (67%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 111215 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 111274 ||| |||| |||| | || ||||| || |||| ||||| || |||||||| ||| Sbjct 103362 TCAGTGACGAACTTGGACAGTGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCC 103303 Query 111275 TCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 111334 |||||||| | ||||| || || | ||| ||||| |||||||||| ||||| Sbjct 103302 GACGTGTACTCGACGATTTCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTC 103243 Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 111394 ||||| ||| ||||||| || |||||||| | |||||||||||||||||| || | Sbjct 103242 TGGTTCGACTTGCTGTTGCAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACC 103183 Query 111395 TGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTACAATGGCGTTGGCCCGTC 111452 || | | || || || ||| | | | ||| ||| | | ||||| ||| | Sbjct 103182 TGGGCCTCCAGGATCGCGAACCACAGGTCCTGCGCCCTGATCGTCTTACGTTG--CCGGC 103125 Query 111453 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 111512 |||| ||| || | | | || || | ||||| || ||| |||| | |||| Sbjct 103124 CCTCGTTCTCATAGCGTTCGAACAGCGCAGCGAACTCGTCGCCCCAGACGTCCGCCAGAC 103065 Query 111513 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGA 111572 | || |||| || || ||||| | ||||| || | | ||| || |||| ||||| Sbjct 103064 CGGGCGCCTCGTTCGGGCAGAACAACGACCAGTGGGCGTCGGCCTGCACACGCTGCATGA 103005 Query 111573 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTT 111632 | || || |||||||| ||| |||| || || | | || ||||||| | || | Sbjct 103004 ACAGATCGGGAATCCAAAGGCCGTAAAACAGGTCACGAGCACGTTCCTCTTCCTTGCCGT 102945 Query 111633 GGTT 111636 |||| Sbjct 102944 GGTT 102941 Score = 96.9 bits (106), Expect = 4e-15 Identities = 289/443 (65%), Gaps = 5/443 (1%) Strand=Plus/Minus Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 ||| |||||||| | ||| ||||||||||| || || || || || |||| | ||||| Sbjct 102876 CTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCCCTT 102817 Query 111706 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 || | || | || | || ||||| || ||| || || ||||||||||| || Sbjct 102816 GCGTTTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCATGGG 102757 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822 | || || | || || || || || ||||| || |||| | ||| | Sbjct 102756 GACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACGTT 102697 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 || | ||| | ||||| || || ||| |||| ||||| || || || || || Sbjct 102696 GTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGCGT 102637 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 | ||||| || | ||| ||||| | |||| || | |||||||| ||||| || Sbjct 102636 GTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGACATTTG 102577 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 112001 ||| || || || || ||||| | ||| || | ||||| ||||| || | | || Sbjct 102576 CGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAAC-CACTTCTCGG 102518 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| || ||| || | | | | | | || || | ||||||||||| |||| Sbjct 102517 ACATGAGGTTGTACGTTTGGATGGCCGCCGCGATATCCGACTTGTGGATGCCGACGGCGA 102458 Query 112062 CCCGCATGAACATGTACTGTGGG 112084 | ||||| | ||||| ||||||| Sbjct 102457 CGCGCATCAGCATGTGCTGTGGG 102435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030704684000