Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq68 163 4e-35 seq35 113 6e-20 >seq68 Length=472887 Score = 163 bits (180), Expect = 4e-35 Identities = 675/1049 (64%), Gaps = 42/1049 (4%) Strand=Plus/Minus Query 117834 GATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAG 117893 ||||| ||||||||||| ||||||||||| || | ||||||| || | |||||| || Sbjct 104211 GATCGCAGGTAGTACATGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGAC 104152 Query 117894 GACAACTTGGAGAGGGTTGGACTTTC---CATGAAGAGGTTCATACTTTGGGATTGATCG 117950 | || |||| | | | | | || |||| || ||| | ||| || || || Sbjct 104151 GTCAGCTTGCCAAAGTT---AATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCA 104095 Query 117951 ATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACA 118010 |||||| || ||||| || ||||| ||||||| |||| |||||| ||||| || Sbjct 104094 ATGAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCCCAAACG 104035 Query 118011 GTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCC 118070 ||| |||| |||| ||| | ||| | ||||| | || || |||| || ||| Sbjct 104034 GTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGA----CCC 103979 Query 118071 GCCTTGA-CCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATC 118126 | || |||| || | | || || | ||| || || || | || || Sbjct 103978 GTTGTGTGCCATCAGCTGGTGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAGGTC 103919 Query 118127 CTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 118186 | ||| || ||||| |||| || |||||||| || || |||||| ||||| Sbjct 103918 CACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGAT 103859 Query 118187 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 118246 ||| ||||||| ||||| |||||||| ||||| |||| ||| ||| || || ||||| Sbjct 103858 GTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGT 103799 Query 118247 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCC---CTAATGCGTTCCTT 118303 |||||| || || | || | || || | || | || | | || |||| Sbjct 103798 GGGCATCGGCGCGAGCAGCAACGAATTCCGCATGCCATG--CCGGGCGATATCGG-CCTT 103742 Query 118304 GAGAGCGTCCCAGTCGTAGTTGAG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 118362 || ||||||||||| | | | | | | || | | |||||| || |||||||| | Sbjct 103741 CAGCGCGTCCCAGTCCCA-TCGCGACGACGGCTTTACATTCCACATGTCGAACTGGAGAA 103683 Query 118363 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT 118422 | || |||||||| || || || | ||| || ||||| || | |||| | Sbjct 103682 TGCCCTGGGACGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGTCCTTAACGGCCAGAT 103623 Query 118423 C---GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATG-CGAGCATTCATT 118478 | |||| || | ||| || || || || || || ||| || | |||| | Sbjct 103622 CCTTGGAG---GCAGTGCAGGCCGCAAAGTAGATCGTCTCGAAGATGTCGCGG-TTCAGT 103567 Query 118479 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCT 118538 || ||||| || || |||| | || | || || | ||||| || || Sbjct 103566 GCGCGCGCCTCCGGCGAGTCGAACGGGTACCGCATCTGGATGAAGGCGTCCGCAAGGCCC 103507 Query 118539 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACG 118595 ||||| |||| || | || | |||| ||| || || || | ||| | || ||| Sbjct 103506 TGGACGCCGATTCCGACGGGCCTGTGTCGCATGTTCGA--TCGGCGCGCT-TCGGGCACA 103450 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || ||| | || | ||||| ||| | || || || || ||| | || | || Sbjct 103449 GGGTAATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAGTGTACGTCACGTCG 103390 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 | ||||| | | | || || || | ||| |||| |||| | || ||||| Sbjct 103389 TACAGCTTATGGAAGTCGAACGTGG------CGTCAGTGACGAACTTGGACAGTGCGATC 103336 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 |||||||| || || || | ||||| ||| |||||||| | |||||||||||| Sbjct 103335 GACGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACGTGTACTCGACGATTTCCGTGCAC 103276 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| ||||| || || |||| |||||| || || ||||| |||| || || ||| Sbjct 103275 AGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAGCGTCC 103216 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 ||||| | |||||| ||||||||||| || Sbjct 103215 TTGTACATCATGTAGGGCGTCCCCGTTTC 103187 Score = 134 bits (148), Expect = 2e-26 Identities = 355/534 (66%), Gaps = 15/534 (3%) Strand=Plus/Minus Query 119117 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 119176 || ||||| || || | ||| |||||||||||||||||||||||||| |||| | || Sbjct 102879 CAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCC 102820 Query 119177 CTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233 ||| || | || |||||| || || | |||||| || || || |||||||| Sbjct 102819 CTTGCGTTTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCAT 102760 Query 119234 TGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTG 119291 || | ||| || | || ||| || || || |||| || ||| | |||| | Sbjct 102759 GGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCC--GGTGGCGCGC 102702 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 || | ||| | ||| | ||||| || || ||| |||| ||||| ||||| || Sbjct 102701 ACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGC 102642 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 || || ||||||| || ||||| ||||| ||| || | ||||||||| |||| Sbjct 102641 AGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGAC 102582 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 ||||| || ||| || || |||||||| | || || | |||||| ||||| || | Sbjct 102581 ATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAAC-CACTT 102523 Query 119472 -TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 119530 | |||||| || ||| || | | | | || | || || | ||| || |||| Sbjct 102522 CTCGGACATGAGGTTGTACGTTTGGATGGCCGCCGCGATATCCGACTTGTGGATGCCGAC 102463 Query 119531 CGAGACCCGCATAAACATGTATTG-GGGTGTT--TCCATCAGGATACCATCGAGCCTCTG 119587 | ||| ||||| | ||||| || ||| | | | ||| | || |||| | || | Sbjct 102462 GGCGACGCGCATCAGCATGTGCTGTGGGCGCTCGGCGATC---TTGCCGTCGACCTTCAG 102406 Query 119588 GAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCCG 119641 ||||| | |||| |||||||| || |||||| |||| ||| | || || Sbjct 102405 CAGGTACGACCGTTCCAGGGTCTTGAAGCCGAAATAGTCAAAGTCGAAATCGCG 102352 >seq35 Length=630556 Score = 113 bits (124), Expect = 6e-20 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 || ||||| ||| | || || || |||| | ||| || || ||||||||||| Sbjct 186145 AACTACCGTGAAGCGTACGGCCTACACGCGTCCAATGGCATCCTGTTCAACCACGAAAGC 186204 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTG 12044 || |||||||||||| |||||||| |||||||| || || | |||| | Sbjct 186205 CCGCGTCGTGGCCCGACGTTCGTGACCCGCAAGATCACGCGTGCCGTCGCTCGCATCGCG 186264 Query 12045 GCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACAT 12104 || || | ||| | | | | | |||||| || ||||| || | |||||||| || Sbjct 186265 GCCGGCAAACAGGACTGCCTGTACCTCGGGAACATCGACGCCAAGCGTGACTGGGGGCAC 186324 Query 12105 GCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATAT 12164 ||||||||||| || | ||||||||| | | | || || || || |||| || || Sbjct 186325 GCCAAGGACTACGTCGCTGCCATGTGGATGATGATGCAGCAGGAGAAGCCGGATGACTAC 186384 Query 12165 GTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 12209 ||| ||||||| || ||||| ||| | ||| | || ||||| ||| Sbjct 186385 GTCATCGCGACCGGCGAGACGCACACGGTCCGCGAATTCGTCGAG 186429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433924477400