Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq68 87.8 2e-12 >seq68 Length=472887 Score = 87.8 bits (96), Expect = 2e-12 Identities = 289/446 (65%), Gaps = 5/446 (1%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||||||| ||||| | |||||||| ||| |||| || || | || || | | | Sbjct 102435 CCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCCACAAGTCGGATATCGCGGCGGC 102494 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | | || ||| || |||||| | | || ||||| ||||| | || ||| | | Sbjct 102495 CATCCAAACGTACAACCTCATGTCCGAGAAGTG-GTTCACGCACGCGTCCCCGACCATGT 102553 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || || || || |||||||| |||||||| | || |||| | | Sbjct 102554 TCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCAAGAACG 102613 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| ||| | || ||||| | || || || || || ||||| |||| ||| | Sbjct 102614 ACTCCATCGAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCG 102673 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | ||| | || | ||| | |||| || ||||| || || | Sbjct 102674 GCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCACCGGCTCCTACATTCGTGGTACGA 102733 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || || | || ||||||||||| || || ||| || ||||| | Sbjct 102734 ACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACG 102793 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || | || ||||| | |||| || || || || || ||||||| Sbjct 102794 TCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCGTGGCACG 102853 Query 104637 CGGATATCATGGAGTTCCTTGAGTTG 104662 |||| ||| | |||||||| ||| || Sbjct 102854 CGGACATCTTCGAGTTCCTGGAGCTG 102879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259597024600