Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq112 111 5e-19 seq76 107 6e-18 seq122 91.5 4e-13 >seq112 Length=800634 Score = 111 bits (122), Expect = 5e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||||||||| | | || || ||||| || || ||||| || || || || || || | Sbjct 314858 TACCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 314917 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | || || ||||| || || || ||||| || || || ||||| || |||||||||| Sbjct 314918 CGAGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAG 314977 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 | || || || || |||||||| || ||||| || | || |||| || || || | Sbjct 314978 GGATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGA 315037 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | ||| | ||||| || || || || || || || |||||||| Sbjct 315038 CATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 Score = 100 bits (110), Expect = 9e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||||||||| | | || || | ||||| || ||||| || || || || ||||| | Sbjct 314493 TACCACCACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGG 314552 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 || ||||| ||||| || | || || || || ||||| ||||| || |||||||||| Sbjct 314553 CCAAGGTTCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAG 314612 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCG 140673 | || || || ||||||||||| || || || || | || |||| Sbjct 314613 GGATACCCTCCTTATCCTGAATCTTGGCCTTCACCGTCTCGATCG 314657 >seq76 Length=455665 Score = 107 bits (118), Expect = 6e-18 Identities = 437/680 (64%), Gaps = 13/680 (2%) Strand=Plus/Plus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| || || || || ||| | || ||||| || ||||| || || ||| Sbjct 159326 GTGGAGATCATTGCCAACGACCAGGGCAACCGCACGACGCCGTCGTACGTCGCCTTCACC 159385 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | |||||||| | || || || || ||||| || || | || Sbjct 159386 GAGACCGAGCGTCTCATTGGTGAGGCCGCCAAGAACCAGGCTGCCCGAAACCCGGAGAAC 159445 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAA-ATCTACACAATC 349437 ||||| ||||| ||||| || || || | | || || ||| ||| || | Sbjct 159446 ACGGTCCACGATGCCAAGCGCCTGATCGGCCGCAAGTTCTCCGACCCGATCGTT-CAGGC 159504 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || | | || || || || || || || || || || |||| Sbjct 159505 CGACATGAAGCTGTGGCCGTTCACGGTCGTCAAGAAGGAGGGCGACCGCCCGGCCTTTGA 159564 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAA-ATTTCATCAATGGTTT 349556 ||| | || || || || || || || |||||| || | || || || ||||| Sbjct 159565 GGTCCAGTACAAGGGCGA-CACGTGCACGTTCTACCCGGAGGAGATCTCGTCCATGGTCC 159623 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | | || |||| ||| | || || || || | || ||| | || | | || || | Sbjct 159624 TCATCAAGATGAGGGAGACGGCCGAGGCGTACCTCGGCGAATCCGTCAACAACGCCGTCA 159683 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | || || || ||||| || || || | |||||| || || || || ||||| | | Sbjct 159684 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGTCAGGCGACGAAGGACGCTGGTATGA 159743 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| || | || || || | || || || || || || || || || || || || | Sbjct 159744 TTGCCGGCCTGAACGTCCTCCGTATCATCAACGAGCCGACCGCCGCCGCCATCGCCTACG 159803 Query 349737 GGCTTGATAAAATGAGTGACCAA----GaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 | || || || | | | |||| || | || | || || ||||| | |||||| Sbjct 159804 GCCTCGACAAGA--ACT--CCAAATCGGAGATGAACGTCCTGATCTTTGACCTGGGTGGT 159859 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||| || ||||| || | || ||| | || || || || || || || || || || Sbjct 159860 GGTACGTTCGATGTCTCCGTCCTGACAATCGAGGACGGCATCTTCGAGGTCAAGGCCACC 159919 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || ||||| || || || ||||| || || || || || || ||||| ||| || | Sbjct 159920 GCCGGTGACACCCACCTCGGTGGCGAGGACTTCGACAACCGCCTCGTCCAGCACTTCGCC 159979 Query 349913 AAAGAATTTAAGCGTCAAGC 349932 | || || ||||| ||||| Sbjct 159980 GAGGAGTTCAAGCG-CAAGC 159998 >seq122 Length=778307 Score = 91.5 bits (100), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || | Sbjct 341084 ACCACCACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 341143 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || ||||||||||| ||||| || || || || || Sbjct 341144 CAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGG 341203 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || || || || || |||| || || | | || Sbjct 341204 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCAC 341263 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | ||||| ||||| || || || || || || ||||| Sbjct 341264 ATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 341311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251196657495