Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq68 233 2e-56 seq35 107 2e-18 >seq68 Length=472887 Score = 233 bits (258), Expect = 2e-56 Identities = 283/380 (74%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 53246 ACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCT 53305 |||||| || | ||| | | |||| || |||||||| | || ||| |||||||||| Sbjct 102502 ACGTACAACCTCATGTCCGAGAAGTGGTTCACGCACGCGTCCCCGACCATGTTCAACGCC 102561 Query 53306 GGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATC 53365 || ||| ||| || |||||| |||||||||||||||| | ||| | ||||| ||| Sbjct 102562 GGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCAAGAACGACTCCATC 102621 Query 53366 GACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATC 53425 || ||||||||||| ||||| || || ||| ||||||||||| | | || || || Sbjct 102622 GAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCGGCGGCATT 102681 Query 53426 GGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGT 53484 || ||||| ||| | ||||| || || | |||| | || || ||||||||| Sbjct 102682 GGCGTCCACGTGCAC-AACGTGCGCGCCACCGGCTCCTACATTCGTGGTACGAACGGCA- 102739 Query 53485 CGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACC 53543 || ||| || ||||| || ||||| ||||| ||| | |||| ||||| |||||| ||| Sbjct 102740 CGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACGTCGACC 102799 Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 |||| || ||||| |||||||| |||||||| | ||||| || ||||||||||| |||| Sbjct 102800 AGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCGTGGCACGCGGACA 102859 Query 53604 TTATGGAGTTTCTCGAGCTG 53623 | | ||||| || |||||| Sbjct 102860 TCTTCGAGTTCCTGGAGCTG 102879 Score = 179 bits (198), Expect = 4e-40 Identities = 557/850 (66%), Gaps = 34/850 (4%) Strand=Plus/Plus Query 55094 TTTGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTC 55153 || ||||| | ||||| |||| |||||| ||| || | |||||||||| ||| Sbjct 103370 TTCGACTTCCATAAGCTGTACGACGTGACGTACACTGTAACGCTGAACCTGAACAAGGTG 103429 Query 55154 ATCGACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGG 55210 |||||| || || ||||| | | |||||| ||| || ||| | || ||| || Sbjct 103430 ATCGACGGCAACTATTACCCTGTGCCCGAAGCG---CGCCGATCGAACATGCGACACAGG 103486 Query 55211 CCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCAT---GATGCTCGGATTGCCC 55267 ||| ||| ||||| || |||||| | || ||| |||||| ||||| | | || Sbjct 103487 CCCGTCGGAATCGGCGTCCAGGGCCTTGCGGACGCCTTCATCCAGATGC---GGTACCCG 103543 Query 55268 TTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGC 55326 ||||||||| || || | | | |||| ||||||||| || || ||||||||||| Sbjct 103544 TTCGACTCGCCGGAGGCGCGCGCACTGAACCGCGACATCTTCGAGACG-ATCTACTTTGC 103602 Query 55327 AGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGA 55386 || | | || ||||||| | | || || |||||||| |||||| || Sbjct 103603 GGCCTGCACTGCCTCCAAGGATCTGGCCGTTAAGGACGGCCCCTACGAGTCGTTCCCTGG 103662 Query 55387 TTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAGTCT--GACCCC 55441 || || | |||| ||||||||||||| | ||| | ||| | | | | Sbjct 103663 CAGCCCGGCGTCCCAGGGCATTCTCCAGTTCGACATGTGGAATGTAAAGCCGTCGTCGCG 103722 Query 55442 ATG----TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCT 55497 ||| | ||| | ||||| || || | | ||| | || || || |||| Sbjct 103723 ATGGGACTGGGACGCGCTGAAGGCCGATATCGCCCGGCATGGCATGCGGAATTCGTTGCT 103782 Query 55498 CGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGA 55557 | ||||| ||||| || ||||| || |||||| |||| ||||||||| ||||| Sbjct 103783 GCTCGCGCCGATGCCCACAGCGTCAACCAGCCAGATCCTGGGGAACAACGAGTGCTTCGA 103842 Query 55558 GCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAA 55617 ||||||||||| |||||||||| | | || || || |||||||| | | ||||| Sbjct 103843 GCCGTACACGAGCAACATCTACGCGAGACGTGTGCTGGCTGGTGAGTTCACCGTCATCAA 103902 Query 55618 CAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGAT---CAAGAC 55674 ||||||||| | ||||||| || | |||| || | | | | Sbjct 103903 CAAGCACCTGCTGGTGGACCTGATCAACCGGGGCCTGTGGGACGACGACTTGCGCCACCA 103962 Query 55675 GGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG---ATTCCTCTGCGTCTCAA 55731 | || | | |||||| || |||||||| | || || || | | |||||| Sbjct 103963 GCTGATGGCACACAACGGG---TCGGTCCAGAACATTGACCGAATCCCGCAGGATCTCAA 104019 Query 55732 GGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGA 55791 ||| | ||| ||| || |||||||| |||||| |||||||||||| || || Sbjct 104020 GGACCTGTACAAGACCGTTTGGGAGATCAAGCAGAAGTCGCTGATTGACATGGCCGCCGA 104079 Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCAC- 55850 ||| || || | ||| |||||||| || || | ||| || ||| || | || || Sbjct 104080 TCGCGGCGCCTTCATTGACCAGTCGCAATCGTTCAACGTCCACAT-GACCGACATTAACT 104138 Query 55851 TGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGT 55910 | | |||| ||| |||||||| || |||| |||| || || ||||||||||| |||| Sbjct 104139 TTGGCAAGCTGACGTCGATGCATTTCTACGCCTGGACTAAAGGCCTCAAGACGGGCATGT 104198 Query 55911 ACTATCTGCG 55920 |||| ||||| Sbjct 104199 ACTACCTGCG 104208 Score = 82.4 bits (90), Expect = 8e-11 Identities = 194/285 (68%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 53657 CGTGACCTGTTT-ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 |||||||||||| || || || |||||||| || || |||||||| ||| || || Sbjct 102968 CGTGACCTGTTTTACGGC-CTTTGGATTCCCGATCTGTTCATGCAGCGTGTGCAGGCCGA 103026 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGA 53775 || | |||| || | |||||||||||| ||||| || || |||| || || Sbjct 103027 CGCCCACTGGTCGTTGTTCTGCCCGAACGAGGCGCCCGGTCTGGCGGACGTCTGGGGCGA 103086 Query 53776 GGAGTTTAACGAGATGTATCGGACG-TACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTC 53833 ||||| | | ||| ||| ||| || | || | ||||||| | |||| | || Sbjct 103087 CGAGTTCGCTGCGCTGT-TCGAACGCTATG-AGAACGAGGGCCGGCAACGTAAGACGATC 103144 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 | ||||| || | ||| || ||||| || |||||| || ||||| ||||| ||| Sbjct 103145 AGGGCGCAGGACCTGTGGTTCGCGATCCTGGAGGCCCAGGTCGAAACGGGGACGCCCTAC 103204 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||||||| | |||| ||| |||||||||||| Sbjct 103205 ATGATGTACAAGGACGCTTGCAACAGCAAGTCGAACCAGAAGAAC 103249 >seq35 Length=630556 Score = 107 bits (118), Expect = 2e-18 Identities = 243/362 (67%), Gaps = 19/362 (5%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| || || |||| |||||||||| || || | || ||| | || || Sbjct 186435 CGCCTTCTCGACGAATTCGCGGACCGTGTGCGTCTCGCCGGTCGCGATGACGTAGTCATC 186376 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 || || |||||||| ||| | ||||||||| ||||||||||| ||||||||||| Sbjct 186375 CGGCTTCTCCTGCTGCATCATCATCCACATGGCAGCGACGTAGTCCTTGGCGTGCCCCCA 186316 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTGTT------CCA 124654 ||| |||||||| || | ||| ||||| | | ||| ||| |||| || Sbjct 186315 GTCACGCTTGGCGTCGATGTTCCCGAGGTACA-------GGCAGTCCTGTTTGCCGGCCG 186263 Query 124655 C--TCC--GCCAAACCCAGTGTAATCTTGCGCGTCACAAAC-TCGGAACCGCGTCGCTCA 124709 | | | || | | | || |||||||| ||||| ||| |||| || || ||| Sbjct 186262 CGATGCGAGCGACGGCACGCGTGATCTTGCGGGTCACGAACGTCGG-GCCACGACGCGGG 186204 Query 124710 GACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTT 124769 |||||||||||||| |||||| | |||| | ||||||| || |||||||| Sbjct 186203 CTTTCGTGGTTGAACAGGATGCCATTGGACGCGTGTAGGCCGTACGCTTCACGGTAGTTG 186144 Query 124770 TTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGG 124829 ||||| || | | |||||| ||| | || ||| || |||||||| || Sbjct 186143 ACAACAATCCAGTAGGCGTACTGCTTGGCAACGGCGTATGGGGAACGCGGGTAGAACGGC 186084 Query 124830 GT 124831 || Sbjct 186083 GT 186082 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 || ||||||| |||||||||| || ||||| || || |||| || || ||| Sbjct 186422 AATTCGCGGACCGTGTGCGTCTCGCCGGTCGCGATGACGTAGTCATCCGGCTTCTCCTGC 186363 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || | ||| | ||||||||| ||||||| |||| ||||| |||||||| |||||||| Sbjct 186362 TGCATCATCATCCACATGGCAGCGACGTAGTCCTTGGCGTGCCCCCAGTCACGCTTGGCG 186303 Query 159064 TCCATGTTCCCGAG 159077 || ||||||||||| Sbjct 186302 TCGATGTTCCCGAG 186289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214871367000