Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq112 131 1e-25 seq122 98.7 9e-16 seq1 98.7 9e-16 >seq112 Length=800634 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | ||||| ||||| || || || Sbjct 314490 ATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGACTCGGGT 314431 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||| ||||| || || || || || || ||| Sbjct 314430 GACACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 314371 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || || ||| | |||| |||||| Sbjct 314370 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314311 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| || ||| | ||| ||||| |||| ||||| Sbjct 314310 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTGCGTCTGCGTGGTGG 314264 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || | || || || | | Sbjct 315086 ATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGACTCAGGC 315027 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||||| || ||||| ||||| || ||||| || || |||||| Sbjct 315026 GACACGATCGAGACGGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAA 314967 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || || ||| | |||| |||||| Sbjct 314966 CAGCGTCTGATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314907 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | ||| | || ||||| |||| ||||| Sbjct 314906 ATCCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGTGG 314860 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA-ACCGTC 27046 |||||||| || || || || ||||| |||||| | ||||| || || ||||| | || | Sbjct 314259 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGC 314200 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| |||| ||| || || || || || || || ||||| || || || || Sbjct 314199 -GATACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCA 314141 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || || ||| | |||| ||||| Sbjct 314140 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAA 314081 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||||||||| | ||| | || ||||| |||| ||||| Sbjct 314080 CATCCAGAAGGAGTCGACACTGCATCTCGTCCTGCGTCTGCGTGGTGG 314033 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA-ACCGTC 27046 |||||||| || || || || ||||| |||||| | ||||| || || ||||| | || | Sbjct 315317 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGCGGC 315258 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| ||| || || || || || || || ||||| || || || || Sbjct 315257 -GACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGACCA 315199 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || |||| ||| | || | | || ||||| Sbjct 315198 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTACAA 315139 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||||||||| | ||| | || ||||| |||| || || Sbjct 315138 CATTCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGCGG 315091 Score = 109 bits (120), Expect = 5e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| ||| || || ||||| || || || || || || || ||||| Sbjct 314662 CGACACGATCGAGACGGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCA 314603 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | ||||||||| || ||||| || | ||| | |||||||||| Sbjct 314602 ACAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGAACCTTGGCCGATTACAA 314543 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||||||||| | || ||||| ||||| |||| ||||| Sbjct 314542 CATCCAGAAGGAGTCGACACTTCACTTGGTCCTGCGTCTGCGTGGTGG 314495 >seq122 Length=778307 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || ||||||||| | || || || || |||| |||| Sbjct 341311 ATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGTCG 341252 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| ||| ||||| || || || ||||| || ||||| || || || ||| Sbjct 341251 GACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 341192 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| ||| | || | |||| |||||| Sbjct 341191 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAAC 341132 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 341131 ATCCAGAAGGAGTCGAC 341115 >seq1 Length=1189627 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || || || || | Sbjct 523755 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCGGGC 523696 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| || || || ||||| || || || || || || ||| Sbjct 523695 GACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 523636 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || | || | |||| |||||| Sbjct 523635 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTACAAC 523576 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| || || | || | ||| |||| ||||| Sbjct 523575 ATCCAGAAGGAGTCGACGTTGCACCTCGTCCTCCGTCTGCGTGGTGG 523529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917502980800