Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq144 91.5 1e-13 >seq144 Length=755806 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || ||| ||||||| || ||||| |||| |||| ||||| | |||||| || || ||| Sbjct 81819 TTCCCGTTGCTGACAACCAAACGGGTGTTCTGGCGCGGCGTTGCCGAGGAACTCCTTTGG 81878 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || ||| || | ||| |||| || || | ||| ||||| Sbjct 81879 TTCATCAGCGGTTGCACAGACGGCGAGGTGCTCAGCGCCAAAGGCATCCGGATTTGGGAT 81938 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | | ||||| || || || ||||||| || ||||||| ||| ||| ||| Sbjct 81939 GGCAATGGGTCGCGTGAATTCCTGGACAGGCTTGGGTTCCACGATCGTCGTCCGGGTGAC 81998 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 |||| ||||| ||||| ||||||||||| || || || ||| ||||| Sbjct 81999 CTGGGGCCGGTGTACGGTTTCCAGTGGAGGCATTTCGGTGCGAAGTAT 82046 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||||| ||| || || || ||||||||||| ||||| ||||| |||| ||| ||| Sbjct 82046 ATACTTCGCACCGAAATGCCTCCACTGGAAACCGTACACCGGCCCCAGGTCACCCGGACG 81987 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 ||| ||||||| || ||||||| || || || ||||| | | ||||| ||| Sbjct 81986 ACGATCGTGGAACCCAAGCCTGTCCAGGAATTCACGCGACCCATTGCCATCCCAAATCCG 81927 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077 | || || |||| ||| | || ||| || || | |||||| || || || Sbjct 81926 GATGCCTTTGGCGCTGAGCACCTCGCCGTCTGTGCAACCGCTGATGAACCAAAGGAGTTC 81867 Query 7078 CTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 |||| | ||||| |||| |||| ||||| || ||||||| ||| || Sbjct 81866 CTCGGCAACGCCGCGCCAGAACACCCGTTTGGTTGTCAGCAACGGGAA 81819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261475458800