Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq122 188 2e-42 seq1 159 8e-34 seq112 149 1e-30 >seq122 Length=778307 Score = 188 bits (208), Expect = 2e-42 Identities = 175/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| ||||| |||||||| |||||||| || || ||||| || Sbjct 759457 ACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGT 759516 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || ||||||||||| |||||||| ||||| || ||||| || |||| || Sbjct 759517 GCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACC 759576 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| |||||| | ||||| |||||| ||| || || ||||| Sbjct 759577 CTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAG 759636 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || ||||| || || | |||||| Sbjct 759637 CGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 759678 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||| || |||||||| || |||||||| || ||||| || || Sbjct 759226 ACGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGT 759285 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || ||||||||||| || || ||||| || || || ||||| || || | || Sbjct 759286 GCGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCC 759345 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| ||||| || || | |||||||||||| || || || || Sbjct 759346 TTCCTTGTCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAG 759405 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || ||||| ||||| || || | |||||| Sbjct 759406 AGTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 759447 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || || ||||| || |||||||| || || || || || Sbjct 341090 ACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 341149 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || ||||||||||| || || ||||| || || |||||||| || |||| || Sbjct 341150 GCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCC 341209 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||| ||||| ||||| || | || ||||| Sbjct 341210 CTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAG 341269 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || || || ||||| || || | ||||| Sbjct 341270 TGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 341311 >seq1 Length=1189627 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| | || ||||| || |||||||| || || || || || | ||||| Sbjct 523544 AGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCC 523603 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || |||||||| ||||||| || ||||||||| Sbjct 523604 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC 523663 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGT---CAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || ||| | ||||| |||| | ||| || || ||||| |||||| Sbjct 523664 TGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAG---TCGACATCGAGCGTGATC 523720 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 523721 GTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 523755 >seq112 Length=800634 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || |||||||| || || || ||||| | ||||| Sbjct 314048 AGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 314107 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||| || || | || ||||| ||| Sbjct 314108 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCC 314167 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| | ||||| || || ||| || || || || || |||||| Sbjct 314168 TGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTC 314227 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 314228 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || || ||||| || ||||| || || | || || Sbjct 315106 AGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCC 315165 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || |||||||| || | || ||||| ||| Sbjct 315166 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCC 315225 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| | ||||| ||||| ||| || || || || || |||||| Sbjct 315226 TGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTC 315285 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 315286 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 141 bits (156), Expect = 2e-28 Identities = 152/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| || || || ||||| | ||||| |||||||||||||| Sbjct 314294 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCG 314353 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| || || |||||||| || |||| || ||||||||||| ||||| ||| Sbjct 314354 GCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTC 314413 Query 211038 ACGTTTTCGATGGTGTCA---GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||||| |||||| ||| || || || || || || ||||| || || || Sbjct 314414 ACAGTTTCGATCGTGTCACCCGAG---TCGACGTCAAGCGTAATGGTCTTCCCTGTCAGC 314470 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 314471 GTCTTGACGAAGATCTGCAT 314490 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || |||||||| || || || ||||| | ||||| Sbjct 314875 AGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 314934 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || || || ||||| |||||||| | || ||||||||| Sbjct 314935 TCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCC 314994 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGT---CAGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| ||| || | ||||| |||| | ||| || || || | ||||| Sbjct 314995 TGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAG---TCGACATCCAATGTGATG 315051 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 315052 GTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 Score = 111 bits (122), Expect = 4e-19 Identities = 122/161 (76%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||||||||||||| |||||||| || || || ||||| || |||| || || Sbjct 314698 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCT 314757 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA---GAGCTTTCAACCTCGAGA 211073 |||||||| ||||| ||||| ||||||| |||||| ||| || || || || Sbjct 314758 TTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAG---TCGACGTCAAGC 314814 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || || ||||| || || | |||||| Sbjct 314815 GTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 314855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149549480225