Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq112 100 2e-16 seq122 95.1 1e-14 >seq112 Length=800634 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || | || || ||||| ||||| || || Sbjct 314068 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 314127 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | || | || ||| || ||| ||| || || | ||| Sbjct 314128 GATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGT 314187 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | |||||||| |||||||||| || || | || ||||||||||| || || Sbjct 314188 CTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGAC 314247 Query 39273 AAAGATTTGCATC 39285 ||||| |||||| Sbjct 314248 GAAGATCTGCATC 314260 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || || || || || || |||| || ||||| Sbjct 315114 ATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCCTCCAGCTG 315173 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| || |||||||||||||| | || | || ||| || ||| ||| || Sbjct 315174 CTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTT 315233 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | |||| | | ||| |||| ||||| |||| ||| || | || ||||| Sbjct 315234 GGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTCTTGCCCGT 315293 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 ||| || || || ||||| |||||| Sbjct 315294 CAGGGTCTTCACGAAGATCTGCATC 315318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| || || || |||||||||||||| | ||| | | ||||||| Sbjct 314701 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTG 314760 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| || || || | ||| | | || || | ||| || ||||| | ||| || Sbjct 314761 TCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAATG 314820 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | ||||| |||||||| || || ||||| |||||| Sbjct 314821 GTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCATC 314856 >seq122 Length=778307 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || || || || || |||| || ||||| Sbjct 759245 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGC 759304 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || |||||||| || |||||||||||||| | || | || || |||||| || ||| Sbjct 759305 TTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTC 759364 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| ||| | | || || | || || || |||| ||||| | || || || Sbjct 759365 GCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTG 759424 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293 ||||| || || ||||| |||||| || |||| Sbjct 759425 AGCGTCTTCACGAAGATCTGCATCGTTCCGCC 759456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || |||||| || || || || |||||||| || ||| | || || Sbjct 759469 CACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATCCTC 759528 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || || ||||||||||||| || | | ||| |||||| Sbjct 759529 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTG 759588 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | ||| | | ||| || | || ||||| | ||| || | || Sbjct 759589 GATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTCTT 759648 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || || ||||| ||||| Sbjct 759649 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 759678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544736210645