Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq112 89.7 3e-13 >seq112 Length=800634 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || ||||| || || ||||| | || || ||||| Sbjct 315086 ATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGACTCAGGC 315027 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || ||| ||||| || || | || || |||||| Sbjct 315026 GACACGATCGAGACGGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAA 314967 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || ||||| || | ||||| | | ||| |||||| Sbjct 314966 CAGCGTCTGATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314907 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 314906 ATCCAGAAGGAGTCGAC 314890 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || ||||| || || || || ||| | Sbjct 315317 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGCGGC 315258 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || || || | ||||| || || Sbjct 315257 GACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGACCAG 315198 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || ||||| |||| ||||| | | || |||||| Sbjct 315197 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTACAAC 315138 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 315137 ATTCAGAAGGAGTCGAC 315121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008920283820