Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq144 91.5 1e-13 >seq144 Length=755806 Score = 91.5 bits (100), Expect = 1e-13 Identities = 177/261 (68%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 ||||||||||||||||||| ||||||||||| |||||||| ||| | | | || Sbjct 82035 CGAAATGCCTCCACTGGAAACCGTACACCGGCCCCAGGTCACCCGGACGACGATCGTGGA 81976 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 | || | |||||| || || | || || ||| | ||||| ||| | || || Sbjct 81975 ACCCAAGCCTGTCCAGGAATTCACGCGACCCATTGCCATCCCAAATCCGGATGCCTTTGG 81916 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30194 || |||| | | | || |||| | || |||| |||||| || || ||||| | ||| Sbjct 81915 CGCTGAGCACCTCGCCGTCTGTGCAACCGCTGATGAACCAAAGGAGTTCCTCGGCAACGC 81856 Query 30195 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC---CTTGAGGCCGTACC 30251 | ||| || |||| ||||| || || | || ||||| || | |||| || ||| Sbjct 81855 CGCGCCAGAACACCCGTTTGGTTGTCAGCAACGGGAACTGCCCATTCCTGAGATCGAACC 81796 Query 30252 TCGCCTGAGACCCAAACATGG 30272 | ||| | |||||||| || Sbjct 81795 GCATCTGCGCCCCAAACACGG 81775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162383231190