Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq144 86.0 5e-12 >seq144 Length=755806 Score = 86.0 bits (94), Expect = 5e-12 Identities = 182/271 (67%), Gaps = 3/271 (1%) Strand=Plus/Minus Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558 |||| || |||||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct 82045 TACTTCGCACCGAAATGCCTCCACTGGAAACCGTACACCGGCCCCAGGTCACCCGGACGA 81986 Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618 | | | ||| || | |||||| || || | || || ||| | ||||| ||| Sbjct 81985 CGATCGTGGAACCCAAGCCTGTCCAGGAATTCACGCGACCCATTGCCATCCCAAATCCGG 81926 Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 27678 | || || || |||| | | | || |||| | || |||| |||||| || || ||| Sbjct 81925 ATGCCTTTGGCGCTGAGCACCTCGCCGTCTGTGCAACCGCTGATGAACCAAAGGAGTTCC 81866 Query 27679 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC---CTTG 27735 || | ||| | ||| || |||| ||||| || || | || ||||| || | || Sbjct 81865 TCGGCAACGCCGCGCCAGAACACCCGTTTGGTTGTCAGCAACGGGAACTGCCCATTCCTG 81806 Query 27736 AGGCCGTACCTGGCCTGAGAACCAAACACGG 27766 || || ||| ||| | |||||||||| Sbjct 81805 AGATCGAACCGCATCTGCGCCCCAAACACGG 81775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506456944115