Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq122 131 4e-25 seq112 127 5e-24 seq1 100 7e-16 >seq122 Length=778307 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || || | || | ||| || Sbjct 759236 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCC 759295 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| || | ||||||||| | || ||| |||||||| || Sbjct 759296 TCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCC 759355 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||||||||| | | |||| | || || || ||||| || || Sbjct 759356 TGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTC 759415 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||||||||||| |||||| Sbjct 759416 TTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 759447 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| |||||||| ||||||||||| ||||| | || | ||||| Sbjct 759467 AGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATCC 759526 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || || || ||||| || Sbjct 759527 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCC 759586 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || ||||| | |||| || || || || || ||||| || Sbjct 759587 TGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTC 759646 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||||||||||| |||||| Sbjct 759647 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 759678 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| ||||| | || | || || Sbjct 341100 AGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCC 341159 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||| ||||||| || || || ||||| || Sbjct 341160 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCC 341219 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | ||| | |||| || | | || || || || || || Sbjct 341220 TGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTC 341279 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||| | ||||| Sbjct 341280 TTGCCGGTAAGCGTCTTGACGAATATTTGCAT 341311 >seq112 Length=800634 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || ||||||||||| ||||| | || | ||||| Sbjct 314048 AGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 314107 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||||| || ||| || ||||| || Sbjct 314108 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCC 314167 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || ||||| | | || || || || || || ||||| || Sbjct 314168 TGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTC 314227 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 |||||||| || ||||| ||||||| |||||| |||| Sbjct 314228 TTGCCCGTCAGCGTCTTGACGAAGATCTGCATCGTACC 314265 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || || |||||||| || || | || | ||| || Sbjct 315106 AGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCC 315165 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||||||||| | || ||| || ||||| || Sbjct 315166 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCC 315225 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || ||||| | |||| || || || || || ||||| || Sbjct 315226 TGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTC 315285 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||||||||||| |||||| Sbjct 315286 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 109 bits (120), Expect = 1e-18 Identities = 160/223 (72%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || ||||||||||| ||||| | || | ||||| Sbjct 314875 AGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 314934 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || || | ||| || || | | ||| || ||||| | Sbjct 314935 TCCAGCTGCTTT--CCGGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGT 314992 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGT---CTGAACTCTCTACTTCAAGAGTAA 152067 | ||||| || |||||| ||||| | ||| |||| || || || | || | Sbjct 314993 CCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGA---GTCGACATCCAATGTGA 315049 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 | || |||||||| || ||||| ||||||| |||||| |||| Sbjct 315050 TGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATCGTACC 315092 Score = 102 bits (112), Expect = 2e-16 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | || ||||| || ||||||||||| ||||| | || | ||||| Sbjct 314279 AGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 314338 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||| ||||||| | || || ||||| || Sbjct 314339 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 314398 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATA 152069 ||||| || || ||||| || | |||| || | || || ||||| ||||| Sbjct 314399 TGAATCTTGGCCTTCACAGTTTCGATCGTGTC---ACCCGAGTCGACGTCAAGCGTAATG 314455 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || || || || || ||||| ||||||| |||||| |||| Sbjct 314456 GTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCATCGTACC 314496 >seq1 Length=1189627 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || | || ||||| || ||||||||||| ||||| | || | |||||| Sbjct 523543 GAGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATC 523602 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| || | ||| ||||||| | || || ||||| || Sbjct 523603 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTC 523662 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| ||||| | |||| || || || || || || || Sbjct 523663 CTGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGT 523722 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||||||||||| |||||| Sbjct 523723 CTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 523755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818360750715