Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 210 5e-49 seq122 199 8e-46 seq112 181 2e-40 seq91 84.2 5e-11 >seq1 Length=1189627 Score = 210 bits (232), Expect = 5e-49 Identities = 187/234 (80%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || ||||| || || |||||||||||||| || Sbjct 523528 ACCACCACGCAGACGGAGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGC 523587 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| |||||||| || || || || || ||||||| ||| |||||||| || Sbjct 523588 GAGCGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGG 523647 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| || || ||||| ||||| ||||| | ||||| Sbjct 523648 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGAC 523707 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 ||||| ||||||||||||||||||| ||||| ||||| |||||||| |||| Sbjct 523708 ATCGAGCGTGATCGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCATCGTCAT 523761 >seq122 Length=778307 Score = 199 bits (220), Expect = 8e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| || || || | ||| || || |||||||||||||| || Sbjct 341084 ACCACCACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 341143 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || || |||||||||| ||| |||||||| ||| Sbjct 341144 CAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGG 341203 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || |||| ||||| |||||||| | | || Sbjct 341204 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCAC 341263 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || || | ||||| |||||||| ||||| Sbjct 341264 ATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 341311 Score = 190 bits (210), Expect = 4e-43 Identities = 184/234 (79%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || ||||| || | || ||||| |||||||||||||| ||| Sbjct 759452 CCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCA 759511 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| |||||||| || || || ||||| ||||||| || || ||||| |||| Sbjct 759512 AGCGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGA 759571 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 |||||||||||||| |||||||| || || ||||| ||||| |||| | ||| ||||| Sbjct 759572 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGT-CACCGCTGTCGAC 759630 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 ||||| || || ||||| ||||||| ||||| ||||| |||||||| |||| Sbjct 759631 GTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGGTCAT 759684 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | ||| || || |||||||||||||| || Sbjct 759221 CCACCACGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 759280 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || ||||| |||||||||| ||| || ||||| ||| Sbjct 759281 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGG 759340 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || ||||| || || || || ||||| ||||| || ||||| Sbjct 759341 ATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACA 759400 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || || | ||||| ||||| |||||||| Sbjct 759401 TCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 759447 >seq112 Length=800634 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || ||||| ||||| || || |||||||||||||| || Sbjct 314263 ACCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGC 314322 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || ||||| ||||||| ||| |||||||| || Sbjct 314323 GAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGG 314382 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| || || || || ||||| ||||| | ||||| Sbjct 314383 AATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGAC 314442 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| ||||| |||||||| Sbjct 314443 GTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 314490 Score = 178 bits (196), Expect = 3e-39 Identities = 182/235 (77%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || || ||||| | ||| || || || ||||||||||| || Sbjct 315090 ACCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGC 315149 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| || ||||| || || || ||||||||||||| ||| || |||||| ||| Sbjct 315150 CAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGG 315209 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 || |||||||| || |||||||| || || || || ||||| |||| || ||| || | Sbjct 315210 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGT-CGCCGCTGTCCA 315268 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 | || || || |||||||| ||||||| ||||| ||||| |||||||| |||| Sbjct 315269 CATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCGTCAT 315323 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || ||||| | ||| || || |||||||||||||| || Sbjct 314859 ACCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 314918 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || ||||| || |||| ||| ||||| ||| || Sbjct 314919 GAGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGG 314978 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||||| || || ||||| ||||| | ||||| Sbjct 314979 GATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGAC 315038 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 315039 ATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || ||||| | || || || |||||||||||||| || Sbjct 314032 ACCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGC 314091 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 314092 GAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 314151 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 || |||||||| || |||||||| || || || || ||||| || | || ||| || | Sbjct 314152 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTAT-CGCCGCTGTCCA 314210 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || |||||||| ||||||| ||||| ||||| |||||||| Sbjct 314211 CGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 Score = 120 bits (132), Expect = 6e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | || || || ||||||||||| || || Sbjct 314494 ACCACCACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGC 314553 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| | || || ||||| ||||||| ||| ||||| ||| || Sbjct 314554 CAAGGTTCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGG 314613 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||||| || || || || ||||| ||||| | ||||| Sbjct 314614 GATACCCTCCTTATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGAC 314673 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 || | ||||| ||||| || Sbjct 314674 ATCCAATGTGATGGTCTTCCC 314694 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || ||||| ||||||| ||| || ||||| ||||||||||| Sbjct 314698 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCT 314757 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| || ||||| || || || || ||||| ||||| | ||||| || || || Sbjct 314758 TTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTA 314817 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||| ||||| ||||| |||||||| Sbjct 314818 ATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 314855 >seq91 Length=309066 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||| ||||||||| ||||| | | ||||||||| | ||||||||||||| |||||| Sbjct 113022 CGAATTCGTATAGTGGCCAGTATGCATCCCTGTCACGGATGAGACCGGGGTTCGATTCCC 113081 Query 168809 CGATTCGTCGCGAT 168822 ||||||| ||||| Sbjct 113082 CGATTCGGAGCGAT 113095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736987127910