Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq122 165 6e-36 seq112 161 7e-35 seq1 147 2e-30 >seq122 Length=778307 Score = 165 bits (182), Expect = 6e-36 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||||||||| || ||||| |||| |||| ||| Sbjct 759239 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCC 759298 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||||||||| |||||||||| ||||||||| |||| || | |||||||| ||| Sbjct 759299 AGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGA 759358 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | || | |||||||| | || || || |||| || || ||||| Sbjct 759359 ATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTC 759418 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| |||||||||||||| ||||| Sbjct 759419 CCAGTGAGCGTCTTCACGAAGATCTGCAT 759447 Score = 141 bits (156), Expect = 7e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 || |||| || | || | || ||||||||| || || ||| || ||||||||||| | Sbjct 759447 TCGTTCCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGT 759506 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 |||| || ||| | || || |||||||| ||||| ||||||| |||||||| || | Sbjct 759507 CGGCAAGCGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGG 759566 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | ||| ||||| ||| ||||| ||||| || | || ||||| || | Sbjct 759567 GCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGT 759626 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | |||||| ||||| ||||| ||||||||||||||||| |||||| Sbjct 759627 CGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 759679 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| ||||| |||||| ||||||||||| ||||| || ||| |||| ||| Sbjct 341103 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCC 341162 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| |||||| || || | || | || ||||| ||| Sbjct 341163 AGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 341222 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | || |||| || | || |||||||| Sbjct 341223 ATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTG 341282 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||| |||||||| Sbjct 341283 CCGGTAAGCGTCTTGACGAATATTTGCAT 341311 >seq112 Length=800634 Score = 161 bits (178), Expect = 7e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || || || ||||| |||||| || |||||||| || || Sbjct 315091 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 315150 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| ||||||||||| ||||||||||||| ||||||||| || | || Sbjct 315151 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 315210 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||||| || | || |||||| || ||||| Sbjct 315211 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACA 315270 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| |||||||||||| ||||| ||||||||||||||||| ||||| Sbjct 315271 TCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 140 bits (154), Expect = 2e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||||||| ||| | || ||||||||||| ||||| || Sbjct 314068 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 314127 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| ||||||||| || | || | || ||||| ||| ||||| ||||| || Sbjct 314128 GATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGT 314187 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || || ||| || ||||| |||| ||||||||||| ||||| || ||||| || Sbjct 314188 CTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGAC 314247 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 314248 GAAGATCTGCAT 314259 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||||||| ||| | || ||||||||||| ||||| || Sbjct 314299 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 314358 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| |||||| || || | || | ||| ||||| ||| ||||| ||||| || Sbjct 314359 GATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGT 314418 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | || || || || | |||||| ||||| || || || ||||| || Sbjct 314419 TTCGATCGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGAC 314478 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 314479 GAAGATCTGCAT 314490 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || || || ||||| |||||| ||||||||||| |||||| Sbjct 314860 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314919 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||| || |||| |||||| ||||| | ||| Sbjct 314920 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGG 314979 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| || | || | || |||||| | || || || Sbjct 314980 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACA 315039 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| ||||| || ||||| |||||||| ||||| Sbjct 315040 TCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 Score = 111 bits (122), Expect = 1e-19 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||| |||||| || |||||| ||||||||||||||||| Sbjct 314495 CCACCACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCC 314554 Query 44171 A--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | ||| || | || |||| |||||| ||||| ||||||| |||||| ||||| | || Sbjct 314555 AAGGTT--CGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAG 314612 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | ||| ||||| ||| ||||| ||||| || | || |||||| | || || | Sbjct 314613 GGATACCCTCCTTATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGA 314672 Query 44289 CCTCCACCGTAATCGTCTTTCC 44310 | |||| || || ||||| || Sbjct 314673 CATCCAATGTGATGGTCTTCCC 314694 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| ||||| ||||||| ||||||||| || | || | ||| || || Sbjct 314701 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTG 314760 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||||| ||| | || ||||| | || || || || | |||||| Sbjct 314761 TCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAATG 314820 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| |||||||| ||||| Sbjct 314821 GTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 314855 >seq1 Length=1189627 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| | ||| |||||| ||||||||||| |||||||| |||| | || || Sbjct 523547 ACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCG 523606 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| |||||| || || | ||| | ||| ||||| ||| Sbjct 523607 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGG 523666 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | || |||||| | || || || || | ||| |||||||| Sbjct 523667 ATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTA 523726 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||||||||| ||||| Sbjct 523727 CCCGTCAGGGTCTTCACGAAGATCTGCAT 523755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989676081805