Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq122 150 4e-31 seq112 138 3e-27 seq1 134 3e-26 >seq122 Length=778307 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || || || ||||| || || ||| ||| Sbjct 759675 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATTACGCTCGACGTCGACAGCGGTGAC 759616 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||| ||| || ||||| |||||||| || || || || || |||||||| Sbjct 759615 ACGATCGAGACCGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAGCAG 759556 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| |||||| | || |||||||| || ||| || Sbjct 759555 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTACAACATC 759496 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || ||||| || || Sbjct 759495 CAGAAAGAGTCGACTCTGCACCTGGT 759470 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||| || || || || ||| Sbjct 759444 CAGATCTTCGTGAAGACGCTCACTGGGAAGACCATCACTCTGGATGTCGATTCTGGTGAC 759385 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||| ||||| |||||||||||||| ||||| ||||| || |||||||| Sbjct 759384 ACCATCGAGACTGTCAAGGCGAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCAGCAG 759325 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || || || || ||| || Sbjct 759324 CGTCTGATCTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTCGCGGACTACAACATC 759265 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || |||||| Sbjct 759264 CAGAAGGAGTCCACCCTCCACCTTGTT 759238 >seq112 Length=800634 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || ||||| || || || ||||| ||| || Sbjct 314256 CAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGCGAT 314197 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||| || || ||||| ||||| || || || ||||| ||||||||||| Sbjct 314196 ACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCAGCAG 314137 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || ||||| || ||| || Sbjct 314136 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATC 314077 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||||||||| || Sbjct 314076 CAGAAGGAGTCGACACTGCATCTCGT 314051 Score = 131 bits (144), Expect = 4e-25 Identities = 155/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || ||||| | || || || ||||| Sbjct 315083 CAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGA---CTCAGGC 315027 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| ||||||| |||||| |||||||||||||| || || |||||||| || || Sbjct 315026 GACACGATCGAGACGGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAA 314967 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || || ||||||||||| ||||| || ||||| | || || ||||| || ||| Sbjct 314966 CAGCGTCTGATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314907 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||||||| || Sbjct 314906 ATCCAGAAGGAGTCGACGCTGCATCTCGT 314878 Score = 114 bits (126), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || ||||| || || || || || || || || ||| | Sbjct 314487 CAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGA---CTCGGGT 314431 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| ||||| | || || |||||||||||||| || || || || |||||||| Sbjct 314430 GACACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 314371 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || ||||| || ||||| | || || ||||| || ||| Sbjct 314370 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314311 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| || || || || ||||||| ||| || Sbjct 314310 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTG 314278 Score = 102 bits (112), Expect = 2e-16 Identities = 118/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || |||||||| || || || || || || || ||| | Sbjct 314852 CAGATCTTCGTCAAGACGCTGACAGGAAAGACCATTACGCTTGACGTCGA---CTCGGGT 314796 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| ||||| | || || ||||||||||||||||| || || || ||||||||| Sbjct 314795 GACACAATCGAAACGGTGAAGGCCAAGATTCAGGACAAAGAGGGTATTCCCCCGGACCAG 314736 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || || ||||||||||| || ||||| || ||||| Sbjct 314735 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGG 314698 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 7/186 (4%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG---ACACCATCGAGAACGTCAAAC 178002 |||| || || ||||| | || || || ||||| |||| ||||||| || || Sbjct 314696 CAGGGAAGACCATCACATTGGATGTCGA---CTCAGGCGACACGATCGAGACGGTGAAGG 314640 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||||||||| || || || |||||||| || || || || || ||||||||||| | Sbjct 314639 CCAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAACAGCGTCTGATCTTCGCCGGCA 314580 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||| | || ||||| | || | |||||||| ||| |||| || || || ||||| | Sbjct 314579 AGCAGTTGGAGGATGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAGTCGACACTTC 314520 Query 178123 ATCTTG 178128 | |||| Sbjct 314519 A-CTTG 314515 >seq1 Length=1189627 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || |||||||| ||||| || || ||| | Sbjct 523752 CAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGA---CTCGGGC 523696 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| ||||||| |||||| ||||| |||||||| || || || ||||||||||| Sbjct 523695 GACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 523636 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| || || |||||||| ||||| | || || ||||| || ||| Sbjct 523635 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTACAAC 523576 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||| || || Sbjct 523575 ATCCAGAAGGAGTCGACGTTGCACCTCGT 523547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728655237010