Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq377 93.3 9e-14 seq1 93.3 9e-14 >seq377 Length=2385 Score = 93.3 bits (102), Expect = 9e-14 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC 230454 ||||| ||||| | || ||||| ||| |||| || || | ||| | ||| |||||| Sbjct 1434 GAAGCTGTTGAGATTGAGAAGGAATTCGTTTGCGATGCGCTACCAGTTGACCTCATTGGC 1493 Query 230455 ATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCA 230514 ||||| || || ||| ||||||||||| || || || ||||| | | | ||| Sbjct 1494 ATGAATTCTCTCCTGATGTCGCAGTACATCGAGTTTGTGGCTGACCGGTTGCTGGCTGCG 1553 Query 230515 CTTGG--TTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTT 230572 || || || ||| | | | | || || || ||||| || | | ||||| || || Sbjct 1554 CTGGGCCTTCCGAAACACTACA-AAGTCGAA-AACCCGTTCGAGTGGATGGACCTGATCA 1611 Query 230573 CGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTG 230632 ||||| || ||||| ||||||||||| || || ||| |||| || || | | | |||| Sbjct 1612 GCCTTCAGGGCAAGACGAACTTCTTCGAGAAACGAGTCGGTGAATACCAAAAGGCCGGTG 1671 Query 230633 TGATGAA 230639 | ||||| Sbjct 1672 TCATGAA 1678 >seq1 Length=1479440 Score = 93.3 bits (102), Expect = 9e-14 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC 230454 ||||| ||||| | || ||||| ||| |||| || || | ||| | ||| |||||| Sbjct 1040197 GAAGCTGTTGAGATTGAGAAGGAATTCGTTTGCGATGCGCTACCAGTTGACCTCATTGGC 1040138 Query 230455 ATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCA 230514 ||||| || || ||| ||||||||||| || || || ||||| | | | ||| Sbjct 1040137 ATGAATTCTCTCCTGATGTCGCAGTACATCGAGTTTGTGGCTGACCGGTTGCTGGCTGCG 1040078 Query 230515 CTTGG--TTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTT 230572 || || || ||| | | | | || || || ||||| || | | ||||| || || Sbjct 1040077 CTGGGCCTTCCGAAACACTACA-AAGTCGAA-AACCCGTTCGAGTGGATGGACCTGATCA 1040020 Query 230573 CGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTG 230632 ||||| || ||||| ||||||||||| || || ||| |||| || || | | | |||| Sbjct 1040019 GCCTTCAGGGCAAGACGAACTTCTTCGAGAAACGAGTCGGTGAATACCAAAAGGCCGGTG 1039960 Query 230633 TGATGAA 230639 | ||||| Sbjct 1039959 TCATGAA 1039953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814959902210