Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq377 84.2 2e-11 seq1 84.2 2e-11 >seq377 Length=2385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/242 (69%), Gaps = 18/242 (7%) Strand=Plus/Minus Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| ||| || |||||| ||||| | | | ||| ||||| || || || || Sbjct 1090 ATCCAGTTCAGTGCCCATTTTGCTTTCTTCTGGACACACGGAATCGTCTCGATCGCGTTG 1031 Query 16442 AACAA------TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 ||||| |||||||| | |||| || | |||||||| || |||| || | Sbjct 1030 AACAACCGTTGTTTCTCTT----CGGAATTTC--TGATATACGTGTCGATCAACAACGAG 977 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 ||| | || ||||| |||||||| || || | || ||||||||||||||||| | || Sbjct 976 TACGTCTCCGAGTGAATGTTCTCCATAGCAAGTTGGAATCCATAGAAGCATCGCACTTCT 917 Query 16556 GCTATTTGTACTTCCACGTA-AAATCG--TTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 | ||| |||| |||| | || || ||| | |||||||| ||||||||| ||| Sbjct 916 GGCCATTGCACTT-CACGCAGGAACCGACTTC--CAAGGTTCTCCAACACGATACCATCA 860 Query 16613 CT 16614 || Sbjct 859 CT 858 >seq1 Length=1479440 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/242 (69%), Gaps = 18/242 (7%) Strand=Plus/Plus Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| ||| || |||||| ||||| | | | ||| ||||| || || || || Sbjct 1040541 ATCCAGTTCAGTGCCCATTTTGCTTTCTTCTGGACACACGGAATCGTCTCGATCGCGTTG 1040600 Query 16442 AACAA------TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 ||||| |||||||| | |||| || | |||||||| || |||| || | Sbjct 1040601 AACAACCGTTGTTTCTCTT----CGGAATTTC--TGATATACGTGTCGATCAACAACGAG 1040654 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 ||| | || ||||| |||||||| || || | || ||||||||||||||||| | || Sbjct 1040655 TACGTCTCCGAGTGAATGTTCTCCATAGCAAGTTGGAATCCATAGAAGCATCGCACTTCT 1040714 Query 16556 GCTATTTGTACTTCCACGTA-AAATCG--TTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 | ||| |||| |||| | || || ||| | |||||||| ||||||||| ||| Sbjct 1040715 GGCCATTGCACTT-CACGCAGGAACCGACTTC--CAAGGTTCTCCAACACGATACCATCA 1040771 Query 16613 CT 16614 || Sbjct 1040772 CT 1040773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410136082440