Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq112 120 4e-22 >seq112 Length=1369157 Score = 120 bits (132), Expect = 4e-22 Identities = 206/296 (70%), Gaps = 15/296 (5%) Strand=Plus/Plus Query 146047 GCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTC-CCCGGGCTCCCT--G 146103 || ||||| |||||||||||||| ||||| || ||||||||||| ||||| | | | Sbjct 972641 GCACCGAAATGCCTCCACTGGAAACCGTACACCGGCCCCAGGTCACCCGGACGACGATCG 972700 Query 146104 TG---CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 || ||| |||| | || ||||| || || ||||| ||| | ||||| ||| | Sbjct 972701 TGGAACCCAAGCCTGTCC------AGGAATTCACGCGACCCATTGCCATCCCAAATCCGG 972754 Query 146161 ACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCT 146220 | ||| | ||| |||| | | | ||| ||| | || ||||||||||| || || || Sbjct 972755 ATGCCTTTGGCGCTGAGCACCTCGCCGTCTGTGCAACCGCTGATGAACCAAAGGAGTTCC 972814 Query 146221 TCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGCC---CCGC 146277 ||| || || | |||||| |||| ||||| ||||||| |||||||| || || Sbjct 972815 TCGGCAACGCCGCGCCAGAACACCCGTTTGGTTGTCAGCAACGGGAACTGCCCATTCCTG 972874 Query 146278 AGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTC 146333 || | || ||| |||| || |||| | ||||| |||||||||| ||| Sbjct 972875 AGATCGAACCGCATCTGCGCCCCAAACACGGCGACCGTGCCAACGCCCGTCCGGTC 972930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590071880234680