Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq334 118 9e-22 seq179 102 7e-17 seq634 100 2e-16 seq67 93.3 4e-14 seq45 87.8 2e-12 >seq334 Length=1041161 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || |||||||| ||| | ||||| ||| Sbjct 527331 CAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATC 527272 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| ||||||||| |||| |||||||| || ||||| || |||||||||||||| Sbjct 527271 CTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTTGTC 527212 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||||| || || |||| || || ||||| || | || | ||| Sbjct 527211 CTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGACGTCCAGCGTGATCGT 527152 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| ||||| || || || || |||||||||| Sbjct 527151 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGG 527117 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || || | ||| | || || ||||| || |||||||| ||| Sbjct 527116 TACCGCCACGAAGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGG 527057 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||||||||||||||| || || ||||||| |||||||| || || | Sbjct 527056 CAAGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCG 526997 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| ||||| || || |||| |||||| |||| Sbjct 526996 GGATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGA 526937 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||| ||||| ||||| || || || || |||||||| Sbjct 526936 CGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || || ||||| ||| | || ||| ||||| ||||| || || Sbjct 526622 GTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCCGTCCTCAAGCTGCTTGCCG 526563 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || |||||||| ||||| || || ||||||||||| || || || Sbjct 526562 GCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTC 526503 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || |||| ||||| ||| ||||| |||| || | || ||||| ||||| || Sbjct 526502 ACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTC 526443 Query 118722 TTTACAAAAATCTGCATGG 118740 || || || |||||||||| Sbjct 526442 TTCACGAAGATCTGCATGG 526424 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || ||||||||||| ||| | ||||| |||||| ||||| || ||| Sbjct 526853 GTCGATTCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATCCTCAAGCTGCTTGCCA 526794 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||||||||| || || || || ||||||||||| || || || Sbjct 526793 GCAAAGATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTG 526734 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 ||| |||| ||||| | ||||| |||| || | || || ||||||| || Sbjct 526733 ACCGTCTCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTC 526674 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 526673 TTCACGAAGATCTGCAT 526657 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||||| ||||| ||||| || ||| Sbjct 945212 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCA 945153 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||| || || || || |||||||||||||| || || || Sbjct 945152 GCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 945093 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || |||| ||||||| | | || |||| || | ||| |||||||| || || Sbjct 945092 ACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGTC 945033 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 945032 TTGACGAATATTTGCAT 945016 >seq179 Length=351413 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| ||||| || || |||||||||||| || || || |||||| Sbjct 22932 ACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCC 22991 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || || ||| |||| |||||||| ||||| ||||| || |||||||| || | Sbjct 22992 AACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATCCTGA 23051 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || ||| |||| ||||| | || ||||| || | || | || || Sbjct 23052 ATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTG-AGTCGACATCCAATGTGATGGTCTT 23110 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 23111 CCCTGTCAGCGTCTTGACGAAGATCTGCAT 23140 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | ||||| |||||| ||||| ||||| Sbjct 23406 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTTCCG 23465 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || |||||||| ||||| ||||| |||||||||||||| ||| || ||| Sbjct 23466 GCAAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTG 23525 Query 118662 ACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 ||| |||| ||||| | || ||||| || | || | || ||||| || || || Sbjct 23526 ACCGTCTCGATCGTGTCGCCTG-AGTCGACATCCAATGTGATGGTCTTGCCCGTAAGCGT 23584 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 23585 CTTGACGAAGATCTGCAT 23602 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || || |||||| ||||| ||||| || || Sbjct 23637 GTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCG 23696 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||||||||| || || || ||||||||||| || || || || Sbjct 23697 GCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 23756 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 ||| |||| ||||| ||| || || || | || | ||| ||||| ||||| || Sbjct 23757 ACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTCTTGCCCGTCAGGGTC 23816 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 23817 TTCACGAAGATCTGCAT 23833 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118541 TGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 ||| ||||| || || |||||||| ||| | ||||| |||||| ||||| || || Sbjct 22481 TGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCC 22540 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660 ||| |||| ||||||||||| || || || ||||||||||| || || || || Sbjct 22541 GGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTT 22600 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 ||| |||| || || ||| || || || | || | ||| ||||| ||||| || Sbjct 22601 CACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGT 22660 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 22661 CTTGACGAAGATCTGCAT 22678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | ||||| |||||| ||||| || || Sbjct 23175 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCG 23234 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| || || || || ||||| ||||| ||| || || Sbjct 23235 GCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGAATCTTGGCCTTC 23294 Query 118662 ACCTGTTCGACGGTGT---CCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 ||| ||||| |||| ||| | ||||| || | || | || || || ||||| Sbjct 23295 ACCGTTTCGATTGTGTCACCCGAG---TCGACGTCAAGCGTAATGGTCTTTCCTGTCAGC 23351 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| Sbjct 23352 GTCTTGACGAAGATCTGCAT 23371 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | ||||| |||||| ||||| || || Sbjct 22713 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCG 22772 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||| || || || || || ||||||||||| ||| || || Sbjct 22773 GCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTC 22832 Query 118662 ACCTGTTCGACGGTGT---CCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || ||||| |||| ||| | ||||| || | || | || || || ||||| Sbjct 22833 ACAGTTTCGATCGTGTCACCCGAG---TCGACGTCAAGCGTAATGGTCTTCCCTGTCAGC 22889 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| Sbjct 22890 GTCTTGACGAAGATCTGCAT 22909 >seq634 Length=872753 Score = 100 bits (110), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | |||||| |||||||||||| || ||| Sbjct 526685 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTGCTTGCCA 526744 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||| || || ||||| || ||||||||||| || || || Sbjct 526745 GCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTG 526804 Query 118662 ACCTGTTCGACGGTGT---CCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || |||| |||| ||| | ||||| |||| || | ||| || || ||||| Sbjct 526805 ACGGTCTCGATCGTGTCGCCCGAG---TCGACATCGAGCGTGATCGTCTTACCCGTCAGG 526861 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| Sbjct 526862 GTCTTCACGAAGATCTGCAT 526881 >seq67 Length=308067 Score = 93.3 bits (102), Expect = 4e-14 Identities = 226/340 (66%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 133016 CGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGA 133075 |||||| ||| || ||||| | | || ||||||||||||| || | |||| Sbjct 209147 CGATTGCGACTGGTCAATGAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTG 209088 Query 133076 TTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTT 133135 ||||||||||| | |||||| | || | ||||| || ||| || ||| ||||||||| Sbjct 209087 CTTGATCTCCCAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTT 209028 Query 133136 CTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGT-GTAAATGTCGA 133194 ||| || |||||||| | |||| | || || |||||| | || || | | | | Sbjct 209027 CTGGACCGACCCGTTGTGTGCCATCAGCTGGTGGCGCAAGT-CGTCGTCCCACAGGCCCC 208969 Query 133195 GATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGC 133254 | | ||| || | | || | || ||||| || ||||| || || || || | Sbjct 208968 GGTTGATCAGGTCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACAC 208909 Query 133255 GTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCG 133314 |||| || | || |||| |||| ||||| | |||||||| || || ||||| Sbjct 208908 GTCTCGCGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGC 208849 Query 133315 CCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTT 133354 || | ||| |||||||| ||| | || ||| || || Sbjct 208848 TGGTTGACGCTGTGGGCATCGGCGCGAGCAGCAACGAATT 208809 >seq45 Length=544478 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 47176 ATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCGTGATTGCGGCCC 47235 ||||| || || ||||| ||||| ||||||| | || ||| ||||| || | ||| Sbjct 517719 ATGTTGCCAAGGTCGCCGACGTGCCGCTCGGTGTCGGCGGGCGCGCCATGCGTCTTGCCG 517778 Query 47236 AACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGC-TCGTGTCGCCGAATTCGTG 47294 |||||||| ||||| |||||| ||| | ||| || |||| ||||||||||| || || Sbjct 517779 AACGGATTGTAGTGCCCGCCGGTCGATGCGCACCC-TTGCGTCGTGTCGCCGTGCTCATG 517837 Query 47295 CACGTGAAATCCGTG 47309 ||||| || ||||| Sbjct 517838 GACGTGGAAGCCGTG 517852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826873365564