Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq179 136 5e-27 seq334 134 2e-26 >seq179 Length=351413 Score = 136 bits (150), Expect = 5e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||||| || |||||| ||||| ||||| || ||||| || ||| | Sbjct 23618 ACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCC 23677 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || || ||||||||||| | ||| | || |||||| Sbjct 23678 GTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 23737 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGA 43146 ||| ||| || || | |||| | | |||||||| || | |||||||| | ||| | Sbjct 23738 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGC-CGCTGTCCACATCCAGCGTAA 23796 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| || ||||| || ||||| ||||| Sbjct 23797 TCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||||| ||| |||||| || || ||||| || || || || || | Sbjct 22463 ACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 22522 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || || ||||||||||| | ||| | || |||||| Sbjct 22523 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTT 22582 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGA 43146 ||| ||| || || | |||| | | ||| |||| || | ||||| || | || | Sbjct 22583 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGC-CGCTGTCCACGTCCAGTGTAA 22641 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| || ||||| ||||| Sbjct 22642 TCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| || | |||||| || |||||| || || ||||| || || || || || | Sbjct 23157 CGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCA 23216 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | || | | ||| ||| Sbjct 23217 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTG 23276 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| | || | || | ||| | | ||||| | ||| || || || | ||| || Sbjct 23277 TCC-TGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAAT 23335 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || |||||||| || ||||| ||||| Sbjct 23336 GGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 >seq334 Length=1041161 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || || |||||| |||| || |||||||| || ||||| Sbjct 526617 CTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCCGTCCTCAAGCTGCTTGCCGGCGAA 526558 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | | |||||||||| ||| || || | || Sbjct 526557 GATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGT 526498 Query 43112 CGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| | || | || || |||| ||| ||||| |||||||| || ||||| | Sbjct 526497 CTCGATCGTGTCAC-CGCTGTCGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCA 526439 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 526438 CGAAGATCTGCAT 526426 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| || || |||| || |||||||||||||| || Sbjct 945207 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAA 945148 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||| ||||| | ||| | || |||||||||| ||| || |||| | Sbjct 945147 GATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGC 945088 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| ||| ||||||||| ||||| || ||||| || |||||||| || Sbjct 945087 CTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGAC 945028 Query 43172 AAAGATTTGCAT 43183 || |||||||| Sbjct 945027 GAATATTTGCAT 945016 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || || || || || | || || |||||||| ||||| || Sbjct 526847 TCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 526788 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | ||| | | |||||||||| ||| || |||| |||| Sbjct 526787 ATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTC 526728 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| || || || |||| ||||||||| || || || | ||||| || Sbjct 526727 TCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACG 526668 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 526667 AAGATCTGCAT 526657 Score = 118 bits (130), Expect = 1e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || ||| |||| || |||||||| || || || Sbjct 527541 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAA 527482 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | ||| | || ||||||||| ||| | || | |||| | Sbjct 527481 GATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCC-TGAATCTTCGCCTTGACAG 527423 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | ||||| | || || ||||| | |||||||| || || || |||||||| | Sbjct 527422 TCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCA 527363 Query 43171 CAAAGATTTGCATTTTTACGCC 43192 | ||||| ||||| || |||| Sbjct 527362 CGAAGATCTGCATCGTTCCGCC 527341 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| || || || || ||| | || || ||||| || || || || Sbjct 527078 TCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAG 527019 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||||||||||||||| | ||| | | |||||||||| |||||| |||| ||| Sbjct 527018 ATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGTC 526959 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | || || || || | |||||| || |||||||| || ||||| || Sbjct 526958 TCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACG 526899 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 526898 AAGATCTGCAT 526888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812832470760