Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq334 131 1e-25 seq179 104 2e-17 seq634 102 5e-17 >seq334 Length=1041161 Score = 131 bits (144), Expect = 1e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | |||||||||||| | ||| |||||||| ||||||||||||| Sbjct 527346 TCCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGC 527287 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || || | |||||| || ||||| || || ||||| |||||| || Sbjct 527286 AAGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGG 527227 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGATTCG 34339 | || ||||||||| || ||| || || || | || |||| ||| || ||| Sbjct 527226 GATGCCCTCCTTGTCCTGGAT-TTTCGCCTT-GACAGTCTCGATCGTATCACCAGAGTCG 527169 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||| |||||| || ||||| || || || ||||| ||||||||||| Sbjct 527168 ACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 527119 Score = 116 bits (128), Expect = 2e-21 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| || ||||| | || ||| ||||| ||||||||||||| Sbjct 526884 TCCACCACGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGC 526825 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGG 34280 || ||| | || || | ||||||||| || || || || |||||||||| || ||| Sbjct 526824 GAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGG 526765 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGATTC 34338 | | | ||||||||| ||||| ||| || || || |||| ||| || || Sbjct 526764 G-ATACCCTCCTTGTCCTGGATCTTCGCCTT--GACCGTCTCGATCGTGTCGCCGGAGTC 526708 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||||| | ||||||||| || ||||| | || ||||| ||||||||||||| || Sbjct 526707 GACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCATCGTTC 526652 Score = 109 bits (120), Expect = 4e-19 Identities = 169/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||| || ||||| | || ||||||||| ||||||||||||| Sbjct 527114 CCGCCACGAAGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCA 527055 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 ||| || | || || | ||| ||||| || || ||||| |||||||||| || |||| Sbjct 527054 AGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGG 526995 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGATTCG 34339 | | ||||||||| || ||| || || || | || || | || || ||| Sbjct 526994 -ATACCCTCCTTGTCCTGGAT-TTTCGCCTT-GACAGTCTCGATGGTGTCACCAGAGTCG 526938 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 ||||||| |||||| || ||||| || || || || || ||||||||||||| || Sbjct 526937 ACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATCGTTC 526883 Score = 100 bits (110), Expect = 2e-16 Identities = 166/233 (71%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| || ||||| | || || ||||| || |||||||||| Sbjct 526653 TCCACCACGGAGACGCAGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGC 526594 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || |||| || | ||||||||| ||||| || || |||||||||||| || Sbjct 526593 TAGCGTCCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 526534 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCG-GT---CGAT- 34336 | | ||||||||| ||||| ||| | ||| | ||| |||| || || | Sbjct 526533 AATACCCTCCTTGTCCTGGATCTTGGCCTTCA---CGG-TCTCG-ATCGTGTCACCGCTG 526479 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | ||| ||||| ||||| || || || ||||| ||||||||||| Sbjct 526478 TCGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 526426 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | ||| || |||| |||| |||||| || || || Sbjct 527540 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAG 527481 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| | |||| | || |||||||| ||||| ||| | | Sbjct 527480 ATCAGACGCTGCTGGTCTGGCGGG-ATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGT 527422 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || || ||||| |||| |||||||| || || ||||| || ||||| Sbjct 527421 CTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCAC 527362 Query 34378 AAAGATCTGCATCGCTC 34394 ||||||||||||| || Sbjct 527361 GAAGATCTGCATCGTTC 527345 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| |||| ||| |||| |||| |||||| || || || Sbjct 945206 TCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAG 945147 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||| ||||| || | || ||||||||| ||||| ||| | | Sbjct 945146 ATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGCC 945087 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | ||| | || || | ||||| || |||||||| || || || || Sbjct 945086 TCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGACG 945027 Query 34379 AAGATCTGCATCG 34391 || || ||||||| Sbjct 945026 AATATTTGCATCG 945014 >seq179 Length=351413 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||| || || || || || || ||||| ||||||||||||| Sbjct 23145 CCGCCACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23204 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| || || ||||||||||| ||| Sbjct 23205 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 23264 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGT----CGATTC 34338 | | ||| ||||| ||||| ||| | || | |||| | || ||| || Sbjct 23265 ATACCCTCTTTGTCCTGAATCTTGGCCTT--CACCG--TTTCGATTGTGTCACCCGAGTC 23320 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 |||||| | ||| ||||| || || || || || || || ||||||||||||| Sbjct 23321 GACGTCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCATCG 23373 Score = 104 bits (114), Expect = 2e-17 Identities = 190/266 (71%), Gaps = 13/266 (5%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||| || || || | || || ||||| ||||||||||| | | Sbjct 23607 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 23666 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || |||| |||| ||||||||| || || || || ||||||||||| | |||| Sbjct 23667 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 23726 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGAT-TC 34338 | || |||||| || ||||| ||| | || || |||| || | || | || Sbjct 23727 -ATGCCCTCCTTATCCTGGATCTTGGCCTT--CACCGTCTCGATCGTGTC-GCCGCTGTC 23782 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGAAT 34398 || |||| ||| || || ||||| || || || ||||| ||||||||||||| || || Sbjct 23783 CACATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCG-TC--AT 23839 Query 34399 GGTGCGTGCGCAGAGCGACAACACGC 34424 |||| | |||| | |||| || ||| Sbjct 23840 GGTG-GCTCGCA-ATCGACGACCCGC 23863 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || || || || ||||| ||||||||||||| Sbjct 22683 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22742 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || || ||||| ||||| ||| Sbjct 22743 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 22802 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | |||| || ||| |||||| Sbjct 22803 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACG 22862 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | ||| ||||| || || || || || || || ||||||||||||| Sbjct 22863 TCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCATCG 22911 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || | || || ||||| ||||||||||||| Sbjct 23376 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23435 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || ||||| || ||||| || || || Sbjct 23436 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGG 23495 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGATTCGA 34340 | || ||||||||| ||| || ||||| || || || |||| ||| || |||| Sbjct 23496 ATGCCCTCCTTGTCCTGAATC-TTGGCTTT-GACCGTCTCGATCGTGTCGCCTGAGTCGA 23553 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 | |||| |||||||| ||||| || || || || || ||||||||||||| Sbjct 23554 CATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATCG 23604 Score = 95.1 bits (104), Expect = 8e-15 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || | || || ||||| ||||||||||||| Sbjct 22452 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22511 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || || | || |||| ||||||||| ||||| || || |||||||||| || |||| Sbjct 22512 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 22571 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGAT-TC 34338 | || |||||| || ||||| ||| | || || |||| ||| | || | || Sbjct 22572 -ATGCCCTCCTTATCCTGGATCTTGGCCTT--CACCGTCTCGATCGTATC-GCCGCTGTC 22627 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 ||||||| || || || ||||| || || || || || ||||||||||||| Sbjct 22628 CACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCG 22680 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||| ||| | || || ||||| |||||||| |||| | Sbjct 22914 CCACCACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCC 22973 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || |||||||||||||| ||||| || || ||||| || || || Sbjct 22974 AAGGTTCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGG 23033 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGATTCGA 34340 | | |||||| || ||||| ||| | || || |||| ||| || |||| Sbjct 23034 ATACCCTCCTTATCCTGAATCTTGGCCTT--CACCGTCTCGATCGTGTCGCCTGAGTCGA 23091 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 | |||| |||||||| || || || || || || || ||||||||||||| Sbjct 23092 CATCCAATGTGATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCATCG 23142 >seq634 Length=872753 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| || || || ||||| ||||||||||||| Sbjct 526655 CCACCACGCAGACGGAGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 526714 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || || | ||||||||| ||||| || || ||||| ||||| || Sbjct 526715 AGCGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGA 526774 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTA-GATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | || | |||| ||| ||| ||||| Sbjct 526775 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGGTC-TCGATCGTGTCGCCCGAGTCGAC 526833 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | |||||| || || || || || || ||||| ||||||||||||| Sbjct 526834 ATCGAGCGTGATCGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCATCG 526883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069373727520