Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq67 143 6e-29 >seq67 Length=308067 Score = 143 bits (158), Expect = 6e-29 Identities = 615/958 (64%), Gaps = 48/958 (5%) Strand=Plus/Plus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| | |||||| || || ||||| || | || | ||||||||| ||| || | Sbjct 206974 CATGTACGTTGTCAAGCGCGATGGCCGCAAGGAGCAGGTGCACTTCGACAAGATCACGTC 207033 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCT---GGAACCCAACTTCGTCGATCATGTGGCCAT 248534 |||||||||||||||||| ||||| || |||| | |||||||| | || | Sbjct 207034 GCGCATCAAGAAGCTCTGCTATGGCCTGTCGGAA---ACGTTCGTCGAGCCGGTCAAGGT 207090 Query 248535 CGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTT 248594 ||||||||| || | ||||||||| | || || || || || || || | Sbjct 207091 CGCCCAGAAGGTCGTCATGGGCGTCTATCCGGGCGTGACCACCGTCGAGCTCGATGAACT 207150 Query 248595 AGCTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCG 248653 || || |||| || || |||||| ||| ||| || ||||| ||| ||||||| || Sbjct 207151 CGCCGCACAGACCGCCGCCTACATGTCGA-CGCAGCATCCCGATTACGCGCTGCTCGCGT 207209 Query 248654 GGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACC---- 248709 | ||| | ||||| | || ||||| | |||| | ||||||||||| ||| Sbjct 207210 CCCGCATCTCTGTCTCCAACCTGCACAAGCAGACGACGAAATCGTTCGTCGAGACCGCAC 207269 Query 248710 -ATGGCTG-------------ACC----TACATGCCT---ATGG--GATGGTCGCCGATG 248746 | | ||| ||| || |||| || | | || ||||||| | Sbjct 207270 GACGCCTGCACGACTGGGTCAACCCGAAGACGCGCCTGGAATCGCCGCTGATCGCCGACG 207329 Query 248747 ACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCA 248806 ||||| |||| | | |||| | ||||| ||| | || ||||| Sbjct 207330 ACGTCTGGGAAATCATCGAAGCGAACGGCGAACTCCTCGACTCGTCCATCATCTACGATC 207389 Query 248807 AAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAA 248866 ||||| || | || | || | ||||| || ||||| ||||| || || || Sbjct 207390 GCGATTTCGACTTTGACTATTTCGGCTTCAAGACCCTGGAACGGTCGTACCTGCTGAAGG 207449 Query 248867 TTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTC 248926 | || |||||||||| || || ||||||||| ||||||| || || ||||| || | Sbjct 207450 TCGACGGCAAGATCGCCGAGCGCCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCC 207509 Query 248927 ACAAGGATGACATAGAGAGCGTGC-TCGAGACGTACACCGGAATGAGTGAACGCTGGATG 248985 ||||| || || | | ||| | || | ||||||| | ||| || ||| | Sbjct 207510 ACAAGTCGGATATCGCG-GCGGCCATCCAAACGTACAACCTCATGTCCGAGAAGTGGTTC 207568 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGC 249045 || || || | ||||| | ||||||||||| || | | || || || ||| Sbjct 207569 ACGCACGCGTCCCCGACCATGTTCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGC 207628 Query 249046 TTTCTTCTTGCCATGCAAG-ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 || || | || | |||| ||||||| |||| ||||| || |||||||| | Sbjct 207629 TTCCTGGTGGCGCT-CAAGAACGACTCCATCGAGGGCATCTACGACACGCTGCGCGAATG 207687 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAA 249164 || | || || || | || ||||| || || || ||| |||| | || || | Sbjct 207688 CGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCAC 207747 Query 249165 GGGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTCG- 249221 || || ||||| ||||| || || ||| | || ||||| ||| | ||||| Sbjct 207748 CGGCTCCTACATTCGTGGTACGAACGGCACGTC--GAACGGCATCGTCCCCATGCTTCGC 207805 Query 249222 ATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG---GCCGGGCGCCGAAAGGGGTCGTT 249278 || | | | ||| ||| | | | || ||||| | |||| || ||||| |||| Sbjct 207806 GTGTTCTCCG-ACACTGCCCGCTACGTCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTT 207864 Query 249279 CGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 |||| |||| ||||| ||||||||| || || || ||||||||||| |||||||| Sbjct 207865 CGCCGTGTACCTGGAACCGTGGCACGCGGACATCTTCGAGTTCCTGGAGCTGAAAAAG 207922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073757223659456