Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq179 141 7e-29 seq334 131 1e-25 seq634 116 3e-21 >seq179 Length=351413 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||||||| ||||||||||||||||||||| ||| ||| |||| ||||| || Sbjct 23631 TGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCCTCCAGCTGC 23690 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || |||| ||||| ||||| || || | |||||||| ||| || || Sbjct 23691 TTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTG 23750 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| |||| | | | |||| || | ||||| |||| |||||||||||||||||| Sbjct 23751 GCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTCTTGCCCGTC 23810 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 23811 AGGGTCTTCACGAAGATCTGCAT 23833 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||| |||||||||||| || |||| | || ||||| || Sbjct 22476 TGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGC 22535 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||| ||||| || || | |||||||| ||| || || Sbjct 22536 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTG 22595 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| |||| | | | | || || | ||||| |||| |||||||||||||||||| Sbjct 22596 GCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTC 22655 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 22656 AGCGTCTTGACGAAGATCTGCAT 22678 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||||||| ||||||||| |||||||||||| || |||| | || ||||| || Sbjct 23400 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGC 23459 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 |||||||| || |||| |||||||| || ||||| | |||||||||||| ||| || Sbjct 23460 TTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTG 23519 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 || |||| | | | |||| || || || |||| || || ||||||||||| Sbjct 23520 GCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTGCCCGTA 23579 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 23580 AGCGTCTTGACGAAGATCTGCAT 23602 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||| ||| ||||||||| |||||||||||| || |||| | || ||||| || Sbjct 22707 TGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGC 22766 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||||||||| || || | ||||||||||||| ||| || Sbjct 22767 TTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTG 22826 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| || || || || | ||||| ||||| || ||| Sbjct 22827 GCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTCCCTGTC 22886 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 22887 AGCGTCTTGACGAAGATCTGCAT 22909 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||| ||| ||||||||| |||||||||||| || ||| | || ||||| || Sbjct 23169 TGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGC 23228 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||| ||||| || || | |||||| |||||| ||| || Sbjct 23229 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGAATCTTG 23288 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| |||| | | |||| || || || || | ||||| ||||| || ||| Sbjct 23289 GCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTTCCTGTC 23348 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 23349 AGCGTCTTGACGAAGATCTGCAT 23371 >seq334 Length=1041161 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||| ||||| |||||||||||| || ||| | || || Sbjct 527327 ACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATCCTCG 527268 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| |||| |||||||||||||| || | |||||||||||| Sbjct 527267 AGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 527208 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | | || ||| || || |||| || ||||||||| Sbjct 527207 ATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGACGTCCAGCGTGATCGTCTTG 527148 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| |||||||| ||||| |||||| Sbjct 527147 CCCGTCAGGGTCTTCACGAAGATCTGCATG 527118 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| ||||||||| || ||||||||| || || |||| || || || Sbjct 526629 GTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCCGTCCTCAAGCTG 526570 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| ||||| |||||||| || | ||||||||||||| || || Sbjct 526569 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTT 526510 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| || | || || || | ||||| ||||||||||| Sbjct 526509 GGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTCTTGCCCGT 526450 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||| ||||| |||||| Sbjct 526449 CAGGGTCTTCACGAAGATCTGCATG 526425 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| || ||||| |||||||||||| || ||| | || || || || Sbjct 527091 GTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTCGAGCTG 527032 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| ||||| || || | ||||| ||||| || || | ||||||||||||| ||||| Sbjct 527031 TTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTT 526972 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | | |||| ||| || || |||| || |||||||||||||| Sbjct 526971 CGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGT 526912 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| || ||||| ||||| Sbjct 526911 CAGGGTCTTGACGAAGATCTGCAT 526888 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| ||||||||| |||||||||||| ||| ||| |||| ||||| || Sbjct 945219 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTG 945160 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||||||||| || || | |||||||||||| || || Sbjct 945159 CTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 945100 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || ||| | | ||||| | |||| || | || ||||||||||| || Sbjct 945099 GGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGT 945040 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| Sbjct 945039 AAGCGTCTTGACGAATATTTGCAT 945016 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || ||| |||| ||||| || Sbjct 527553 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTG 527494 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| || || | || ||||||||| ||| || Sbjct 527493 CTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTT 527434 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | | |||| ||| || || |||| || || ||||| || || Sbjct 527433 CGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGT 527374 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 527373 GAGCGTCTTCACGAAGATCTGCAT 527350 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||||||||||||||| ||| ||| | || || || || Sbjct 526860 GTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATCCTCAAGCTG 526801 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| || || | ||||||||||||| || || Sbjct 526800 CTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATCTT 526741 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| |||| | | | |||| || || || || | || || ||||| || || Sbjct 526740 CGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGTCTTCCCGGT 526681 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 526680 CAAGGTCTTCACGAAGATCTGCAT 526657 >seq634 Length=872753 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||| ||||||||| |||||||||||| || ||| | || || || || Sbjct 526678 GTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTG 526737 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||||||||| ||||| | ||||||||||||| || || Sbjct 526738 CTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTT 526797 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| || || || || | || |||||||| ||||| Sbjct 526798 GGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTACCCGT 526857 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| ||||| ||||| Sbjct 526858 CAGGGTCTTCACGAAGATCTGCAT 526881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071988409007