Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq67 102 8e-17 seq334 98.7 1e-15 >seq67 Length=308067 Score = 102 bits (112), Expect = 8e-17 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 152763 TAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTA 152822 ||||||||||||||||||||||| |||| |||| | |||| ||||| || ||| Sbjct 209239 TAGTACATGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAGCTT- 209181 Query 152823 GCCAAAG-TAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCC 152881 ||||||| || ||||| ||||| ||||| |||||||| || ||||| || ||||| Sbjct 209180 GCCAAAGTTAATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAAGGCGCC 209121 Query 152882 TCTATCTGCTGCCATGTCGATCA 152904 | ||| || |||||||| |||| Sbjct 209120 GCGATCGGCGGCCATGTCAATCA 209098 >seq334 Length=1041161 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || ||||| || ||| || |||| ||| || ||||| Sbjct 945219 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTG 945160 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| |||||||||| || || || || || ||||| || ||||| ||| || Sbjct 945159 CTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 945100 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | || | ||||| | | | |||| || | || | |||||||||||| Sbjct 945099 GGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGT 945040 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| || |||||||||||||| Sbjct 945039 AAGCGTCTTGACGAATATTTGCAT 945016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496059864066400