Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq67 140 5e-28 >seq67 Length=308067 Score = 140 bits (154), Expect = 5e-28 Identities = 278/407 (68%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 96975 GAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAG 97034 ||||||| ||| || | ||| ||||||| | || ||| | || ||| |||||||| || Sbjct 207990 GAAGAGGAACGTGCTCGTGACCTGTTTTACGGCCTTTGGATTCCCGATCTGTTCATGCAG 208049 Query 97035 CGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCC 97094 || || | | || | | ||||| | | ||||| || | | ||||||||| | Sbjct 208050 CGTGTGCAGGCCGACGCCCACTGGTCGTTGTTCTGCCCGAACGAGGCGCCCGGTCTGGCG 208109 Query 97095 GATTGCTGGGGCGAAGAGTTTGAGGCCAAGTAC--ACGGCCTACGAGCAAGAGGGCCGAT 97152 || ||||||||| ||||| | || || | ||| ||| ||| | |||||||| Sbjct 208110 GACGTCTGGGGCGACGAGTTCGCTGCGCTGTTCGAACG--CTATGAGAACGAGGGCCGGC 208167 Query 97153 A-CGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAG 97211 | ||| |||||| || || | || |||||| || ||| || ||| ||||| || Sbjct 208168 AACGTAAGACGA-TCAGGGCGCAGGACCTGTGGTTCGCGATCCTGGAGGCCCAGGTCGAA 208226 Query 97212 ACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCAC 97271 || || || || ||||| | |||||||| | || |||| ||||| || Sbjct 208227 ACGGGGACGCCCTACATGATGTACAAGGACGCTTGCAACAGCAAGTCGAACCAGAAGAAC 208286 Query 97272 TTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGAC 97331 |||| || |||||| || || |||||||||||||| || |||||| | || ||||| Sbjct 208287 CTGGGGACGATCAAGAGCAGTAACCTGTGCACGGAAATCGTCGAGTACACGTCGGCGGAC 208346 Query 97332 GAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 |||||||| || ||| ||||| ||| || ||| ||||||| || Sbjct 208347 GAGACGGCCGTCTGCAACCTGGCGTCGATCGCACTGTCCAAGTTCGT 208393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053021418920