Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq179 125 2e-23 seq334 105 2e-17 >seq179 Length=351413 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| | || || | ||| || Sbjct 23391 AGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 23450 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| |||||||| || | ||||||||||||||| || || || || ||| Sbjct 23451 TCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCC 23510 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| || | || | || |||| | || || || | ||| || ||| Sbjct 23511 TGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTC 23570 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || || |||||||| Sbjct 23571 TTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| || || || || ||||| || || ||||| | || || | ||| || Sbjct 22698 AGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 22757 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | |||||| || || || || || || || ||| Sbjct 22758 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 22817 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||| |||| | || || | | || || || || ||||| ||| Sbjct 22818 TGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGCGTAATGGTC 22877 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 22878 TTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 22909 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| || || || || ||||| || || ||||| | || || | || || Sbjct 23160 AGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCC 23219 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| || || || || || || ||||| ||| Sbjct 23220 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTGTCC 23279 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || |||| | || || | | || || || || ||||| ||| Sbjct 23280 TGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAATGGTC 23339 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 23340 TTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || || ||||| || || || || | | |||| || || || | || || || Sbjct 22943 TGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCCAACTGCTTGCC 23002 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || || || || | ||||||||||||||| || || || |||||||||||||| || || Sbjct 23003 GGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTT 23062 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || | || | || |||| | || || || | ||| || ||||| || || || || Sbjct 23063 CACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTCCCTGTCAGCGT 23122 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 23123 CTTGACGAAGATCTGCAT 23140 >seq334 Length=1041161 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 527562 AAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTC 527503 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| || || || || || ||||| || || Sbjct 527502 CTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTC 527443 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||| | || | ||| || | || || || || || || || || Sbjct 527442 CTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGT 527383 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || |||||||| Sbjct 527382 CTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 527350 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| | || || | || || || || ||||| || Sbjct 527084 GTCGATTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTCGAGCTGTTTGCCG 527025 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||| || || || || Sbjct 527024 GCAAAGATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTG 526965 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||| | || | ||| || | || || || || || || || ||||| || || || || Sbjct 526964 ACAGTCTCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTC 526905 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 526904 TTGACGAAGATCTGCAT 526888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151388560221236