Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq334 102 7e-17 seq179 89.7 4e-13 >seq334 Length=1041161 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | ||| |||||||||||||| Sbjct 527552 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGC 527493 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | ||||||||| || ||| | | |||||||||| ||| ||| Sbjct 527492 TTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTC 527433 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| || | | ||||| || ||| || || | || ||||| || || ||| Sbjct 527432 GCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTG 527373 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || ||||||||||| Sbjct 527372 AGCGTCTTCACGAAGATCTGCATCGT 527347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||| || || | | || | ||||| |||||||| || | | Sbjct 526847 TCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 526788 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| ||| ||| | || ||||||||| || ||| ||||| | | Sbjct 526787 ATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTC 526728 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || ||| || || |||| || ||||| || ||||| | || ||||| Sbjct 526727 TCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACG 526668 Query 48716 AAAATCTGCATCGT 48729 || ||||||||||| Sbjct 526667 AAGATCTGCATCGT 526654 >seq179 Length=351413 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || |||||||| |||||| || ||||||||||| ||||| ||| | |||||| Sbjct 22932 ACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCC 22991 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | |||||| ||| || | || | |||||| ||||| || | || ||||| ||| | Sbjct 22992 AACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATCCTGA 23051 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | | || || ||| || || || | ||| ||||| || Sbjct 23052 ATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTC 23111 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 || || || || || || || ||||||||||| Sbjct 23112 CCTGTCAGCGTCTTGACGAAGATCTGCATCGT 23143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247775622667