Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq179 125 6e-24 seq334 111 1e-19 seq634 98.7 9e-16 >seq179 Length=351413 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | || ||||| || | ||||| || || ||||| || | ||| || ||| Sbjct 23145 CCGCCACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23204 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| || ||| | ||||| | | ||||| || || ||| Sbjct 23205 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 23264 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| |||||||| | ||| || ||||| || | ||| |||||| | ||||||| Sbjct 23265 ATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACG 23324 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||| ||||| ||||| || || || || || ||||||||||| Sbjct 23325 TCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 ||||| || || ||||| || | ||| || ||| | ||| |||||||||||| Sbjct 22707 TGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGC 22766 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | | || || || || |||||||| || ||||| | ||| || Sbjct 22767 TTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTG 22826 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | ||| |||||| | ||||||||||| ||| ||||| || || || Sbjct 22827 GCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTCCCTGTC 22886 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||| Sbjct 22887 AGCGTCTTGACGAAGATCTGCAT 22909 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||| | || || ||||| || | ||| |||||| || || | | Sbjct 22926 CGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCA 22985 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| || ||| | ||||| | | || ||||| ||||| ||||| || || Sbjct 22986 TCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTA 23045 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGAT 94971 || | ||| || ||||| || | ||| ||||| || || |||||| || | ||||| Sbjct 23046 TCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTC-GCCTGAGTCGACATCCAATGTGAT 23104 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || || || ||||||||||| Sbjct 23105 GGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 23140 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| |||||| |||| || | | || ||||| ||||| || || || || Sbjct 23447 ATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTT 23506 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGA 94970 ||| | ||| || || ||||| | ||| ||||| || || |||||| || | |||| Sbjct 23507 GTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTC-GCCTGAGTCGACATCCAATGTGA 23565 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || ||||| || || || ||||||||||| Sbjct 23566 TGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 >seq334 Length=1041161 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| |||||||| ||| ||||||| | || ||||| || || || ||||| || || Sbjct 527043 ATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTT 526984 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| |||||||| | ||| |||||| | ||||||||| | |||||| Sbjct 526983 GTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGACGTCCAGCGTGAT 526924 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || ||||||||||| Sbjct 526923 CGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || |||||||| || ||| Sbjct 526580 TCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTG 526521 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| |||| ||| |||||| || ||||||||| | ||| ||| Sbjct 526520 TCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATG 526461 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 526460 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 526425 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||| | || |||||||| || | ||| || ||| | ||| | | Sbjct 526871 CGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCA 526812 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | | ||||| || || || ||||| || ||| Sbjct 526811 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTG 526752 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | ||| ||||| || ||||||||| | ||||||| Sbjct 526751 TCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATG 526692 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || ||||| ||||||||||| Sbjct 526691 GTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || ||||||| | | ||||| ||||| || || ||||| ||| Sbjct 527504 TCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTG 527445 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || |||||||| | ||| |||||| | ||||| || | |||||| Sbjct 527444 TCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATG 527385 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| ||||||||||| Sbjct 527384 GTCTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 527350 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||| || || || || | ||| || ||| | ||| | Sbjct 527333 CGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCA 527274 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| | ||||| | | || || || || || || || || ||| Sbjct 527273 TCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTTG 527214 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||||| | ||| || ||| | ||||||||| | |||||| Sbjct 527213 TCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGACGTCCAGCGTGATC 527154 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 527153 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 527118 >seq634 Length=872753 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 |||||| || || ||||| || | ||| || ||| | ||| |||||| ||||| Sbjct 526678 GTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTG 526737 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | || || || ||||||||||| || ||||| | || || Sbjct 526738 CTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTT 526797 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 |||||||||| ||| ||||| | |||||| || | |||||| || || || || Sbjct 526798 GGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTACCCGT 526857 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||||||||| Sbjct 526858 CAGGGTCTTCACGAAGATCTGCAT 526881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287462372120