Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq45 123 4e-24 seq201 118 2e-22 >seq45 Length=544478 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || | |||||||| || | || ||||| || || Sbjct 471015 CGCCAAGCGCCATCGCAAGGTGCTGCGCAACAACATCCAGGGCGTGACGAAGCCGGCGAT 471074 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || || || || |||||||| |||| || ||||||| || |||| Sbjct 471075 CCGTCGTCTGGCGCGCCGCGGCGGCGTCAAGCGCATCTCCGGGCTGGTCTACGAGGAGAC 471134 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || | || ||| || || Sbjct 471135 GCGCGGCGTCCTGAAGGTGTTCCTGGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 471194 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | || ||||| |||||| | | || ||||||| || ||||||| || || Sbjct 471195 GCACGCCAGGCGCAAGACGGTCACCGCTCTCGACGTCGTCTACGCCCTGAAACGCCAGGG 471254 Query 16672 C 16672 | Sbjct 471255 C 471255 >seq201 Length=310468 Score = 118 bits (130), Expect = 2e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| || || | |||||||| || | || ||||| || ||| Sbjct 181256 GCTAAGCGCCACCGCAAGGTGCTCCGCAACAACATCCAGGGCGTGACGAAGCCGGCGATC 181315 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| ||||||||||| ||||||||| |||| || | ||||| || |||| Sbjct 181316 CGTCGCCTGGCGCGTCGTGGTGGCGTCAAGCGTATCTCGGGTCTCGTCTACGAGGAGACG 181375 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| |||||||| ||| ||| |||| ||| | | || || ||| Sbjct 181376 CGAGGTGTCCTGAAGGTCTTCCTCGAGAACGTGATCCGTGACTCGGTGACGTACACGGAG 181435 Query 16613 CACGCTAAACGTAAGACTGTCAC 16635 |||||| || ||||| || || Sbjct 181436 CACGCTCGCCGCAAGACCGTGAC 181458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074590157231