Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq67 237 4e-57 >seq67 Length=308067 Score = 237 bits (262), Expect = 4e-57 Identities = 808/1253 (64%), Gaps = 37/1253 (3%) Strand=Plus/Plus Query 363903 AAACACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 || ||||| || |||||||| ||||| ||||| ||||| || | |||||| || | Sbjct 207978 AACCACGGCAAGGAAGAGGAA---CGTGCTCGTGACCTGTTTTACGGCCTTTGGATTCCC 208034 Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAA 364020 || | || ||| |||| ||| |||| | | ||||| | || ||||| |||| Sbjct 208035 GATCTGTTCATGCAGCGTGTGCAGGCCGACGCCCACTGGTCGTTGTTCTGCCCGAACGAG 208094 Query 364021 TGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 || ||||| | || || ||||| ||||| | | ||| || | |||| ||||| Sbjct 208095 GCGCCCGGTCTGGCGGACGTCTGGGGCGACGAGTTCGCTGCGCTGTTCGAACGCTATGAG 208154 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 ||||| | |||||||| || || ||| | || ||||| || ||| |||| Sbjct 208155 AACGAGGGCCGGCAACGTAAGACGATCAGGGCGCAGGACCTGTGGTTCGCGATCCTGGAG 208214 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 | ||| | || || || || ||||| ||| ||||||| || | |||||| ||||||| Sbjct 208215 GCCCAGGTCGAAACGGGGACGCCCTACATGATGTACAAGGACGCTTGCAACAGCAAGTCG 208274 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260 |||||| || |||| || || || || || ||||| || || || || | || ||| Sbjct 208275 AACCAGAAGAACCTGGGGACGATCAAGAGCAGTAACCTGTGCACGGAAATCGTCGAGTAC 208334 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA 364320 || | | |||||||| ||||| || ||||| ||||||||||| || | ||| || Sbjct 208335 ACGTCGGCGGACGAGACGGCCGTCTGCAACCTGGCGTCGATCGCACTGTCCAAGTTCGTC 208394 Query 364321 AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAAT 364380 | || | || || ||| ||| | || || ||||| || || || || || Sbjct 208395 ACTGACGCCACGTTCGACTTCCATAAGCTGTACGACGTGACGTACACTGTAACGCTGAAC 208454 Query 364381 CTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATG 364440 || ||||||| |||||| || ||||| || | || ||||| || || || ||| Sbjct 208455 CTGAACAAGGTGATCGACGGCAACTATTACCCTGTGCCCGAAGCGCGCCGATCGAACATG 208514 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT---GATGCTC 364497 || || | || | || | || || |||||||| || |||| || || ||||| Sbjct 208515 CGACACAGGCCCGTCGGAATCGGCGTCCAGGGCCTTGCGGACGCCTTCATCCAGATGC-- 208572 Query 364498 AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATG 364557 | | || || ||||| || || || | || || || ||||| || || || Sbjct 208573 -GGTACCCGTTCGACTCGCCGGAGGCGCGCGCACTGAACCGCGACATCTTCGAGACGATC 208631 Query 364558 TATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACT 364617 || ||||| || ||||| || ||| |||| | ||| || | Sbjct 208632 TACTTTGCGGCCTGCACTGCCTCCAAGGATCTGGC---------CGTTAAGGACGGCCCC 208682 Query 364618 TATGAGGGGTCCCCT---------CTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAAT 364668 || ||| || |||| || ||||| | ||||||| || | |||||| Sbjct 208683 TACGAGTCGTTCCCTGGCAGCCCGGCGTCCCAGGGCATTCTCCAGTTCGACATGTGGAAT 208742 Query 364669 GTCACGCCATCTGTC-CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGG 364727 || | ||| || ||| |||||| ||||||| |||| || | | |||||| Sbjct 208743 GTAAAGCCGTC-GTCGCGATGGGACTGGGACGCGCTGAAGGCCGATATCGCCCGGCATGG 208801 Query 364728 TACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGG 364787 | || || || | | ||||| |||||||| || || || |||||||| || Sbjct 208802 CATGCGGAATTCGTTGCTGCTCGCGCCGATGCCCACAGCGTCAACCAGCCAGATCCTGGG 208861 Query 364788 AAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGG 364847 ||||||||||||||||| |||| || ||||| | || | | || || || | || Sbjct 208862 GAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGCGAGACGTGTGCTGGCTGG 208921 Query 364848 AGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGG 364907 || || | || | || ||| |||| | ||| || | |||| || ||||||| Sbjct 208922 TGAGTTCACCGTCATCAACAAGCACCTGCTGGTGGACCTGATCAACCGGGGCCTGTGGGA 208981 Query 364908 TGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATT 364967 ||| | || || | | || || || || || || ||||||||| || | Sbjct 208982 CGACGACTTGCGCCACCAGCTGATGGCACACAACGGGTCGGTCCAGAACATTGACCGAAT 209041 Query 364968 TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCT 365024 || | ||||| ||| | ||||| ||||| ||||| || || || ||| | || Sbjct 209042 CCCGCAGGATCTCAAGGACCTGTACAAGACCGTTTGGGAGAT---CAAGCAGAAGTCGCT 209098 Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 ||||| ||||| ||||||||||| || || || ||| || ||||| ||||| Sbjct 209099 GATTGACATGGCCGCCGATCGCGGCGCCTTCATTGACCAGTCGCAATCGTTCAACGTCCA 209158 Query 365085 CATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 |||||| | | || | |||||| || || ||||||||||||| |||| Sbjct 209159 CATGACCGACATTAACTTTGGCAAGCTGACGTCGATGCATTTCTACGCCTGGA 209211 Score = 114 bits (126), Expect = 3e-20 Identities = 306/461 (66%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||| ||||| ||| | ||||| || || | || ||||| ||||| | | Sbjct 207467 GAGCGCCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCCACAAGTCGGATATCGCG 207526 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGT-GTA-TTCACGCACGCCACGCCAA 363565 || || || |||| || || || | || | | || ||||||||||| | || | Sbjct 207527 GCGGCCATCCAAACGTACAACCTCAT--GTCCGAGAAGTGGTTCACGCACGCGTCCCCGA 207584 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | |||| ||| || || || | || || ||||| || ||||| || | | | Sbjct 207585 CCATGTTCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCA 207644 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 || |||| ||||||||||| |||| ||||| || | || || | || |||||| Sbjct 207645 AGAACGACTCCATCGAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAGT 207704 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGC 363744 || ||||| ||||| || | ||||| || || || || | | |||||||| Sbjct 207705 CGGCCGGCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCACCGG-CTCCTACATTCGT 207763 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || || || ||||| || | || ||||||||||| ||||| | | ||||| Sbjct 207764 GGTACGAACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCC 207823 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | |||||||||||||| || || || ||||| || ||||| || |||| || || || Sbjct 207824 CGCTACGTCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCG 207883 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || || || || || ||||| || ||||| |||||| Sbjct 207884 TGGCACGCGGACATCTTCGAGTTCCTGGAGCT---GAAAAA 207921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342461621594