Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq179 111 1e-19 seq334 93.3 3e-14 >seq179 Length=351413 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||||||| |||||||| || |||||||||||||| Sbjct 23376 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23435 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || || || ||| |||| || |||||||| || ||| Sbjct 23436 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGG 23495 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || ||| | | |||||||| | || Sbjct 23496 ATGCCCTCCTTGTCCTGAATCTTGGCT--TTGACCGTCTCGATCGTGTCGCCTGAGTCGA 23553 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || ||||| ||||| || |||||||| Sbjct 23554 CATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| ||| |||||||| || |||||||||||||| Sbjct 23145 CCGCCACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23204 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || ||||| || | || || ||||| |||||| || Sbjct 23205 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 23264 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| ||| | ||||||| | | ||||| || | || Sbjct 23265 ATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACG 23324 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || ||||| ||||| |||||||| ||||| || |||||||| Sbjct 23325 TCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | |||||| || |||||||| || |||||||||||||| Sbjct 22452 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22511 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| || | || || ||||| |||||| || Sbjct 22512 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 22571 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || || ||||||| | | || |||||| ||| Sbjct 22572 ATGCCCTCCTTATCCTGGATCTTGGC--CTTCACCGTCTCGATCGTATCGCCGCTGTCCA 22629 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || |||||||| ||||| || |||||||| Sbjct 22630 CGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||||||| |||||||| || ||||||||||| ||| Sbjct 23607 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 23666 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || ||||| ||| | || || ||||| ||||| || Sbjct 23667 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 23726 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || || ||||||| | | ||||||||| ||| Sbjct 23727 ATGCCCTCCTTATCCTGGATCTTGGC--CTTCACCGTCTCGATCGTGTCGCCGCTGTCCA 23784 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || ||||| || || || || |||||||| Sbjct 23785 CATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| ||| |||||||| || |||||||||||||| Sbjct 22683 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22742 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| || | || || |||||||||||| || Sbjct 22743 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 22802 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | |||||| | | ||||| || | || Sbjct 22803 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACG 22862 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || ||||| || || |||||||| ||||| || |||||||| Sbjct 22863 TCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 22909 >seq334 Length=1041161 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || |||||||||||||||| || | ||||||||| || Sbjct 945218 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGC 945159 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || || |||||||||||| || | |||||| ||||| || || Sbjct 945158 TTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 945099 Query 16851 GCTGCTTCACCTGGC--CCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCC 16908 || ||| || ||| | | ||||| | | || || | ||||| || || || Sbjct 945098 GC--CTTGAC--GGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCC 945043 Query 16909 GGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||| ||||| || || ||||| Sbjct 945042 GGTAAGCGTCTTGACGAATATTTGCAT 945016 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || ||||| || ||||| || |||||||||||||| Sbjct 526883 CCACCACGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCG 526824 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | || ||||| ||| | || || ||||| |||||| || Sbjct 526823 AGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGG 526764 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | | ||| ||| | | |||||||||| || Sbjct 526763 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACG 526704 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || ||||||| || || || || |||||||| Sbjct 526703 TCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405084707014330