Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq334 118 9e-22 seq179 102 7e-17 seq634 93.3 4e-14 >seq334 Length=1041161 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | ||||| || | |||||| |||| |||| |||||| Sbjct 945016 ATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGTCG 945075 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | | ||| || ||| ||||| || || ||||| || |||||| Sbjct 945076 GACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 945135 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || || | ||||| ||| ||| ||||| Sbjct 945136 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAAC 945195 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || ||||| || Sbjct 945196 ATCCAGAAGGAGTCGACGCTGCA 945218 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 ||||| ||||| || || || ||||| |||| || || | ||||| | || || || Sbjct 526882 GGAACGATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTCGAC 526941 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || |||||| |||||| | | ||| |||||| ||||| || || || || || Sbjct 526942 TCTGGTGACACCATCGAGACTGTCAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCG 527001 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||| ||||| | || |||||||||||||| | || |||| ||||| | | ||| Sbjct 527002 GACCAGCAGCGACTCATCTTTGCCGGCAAACAGCTCGAGGATGGGCGCACGCTTGCCGAC 527061 Query 25173 TACAATATTCAAAAAGAATCCACGCTACA 25201 ||||| || || |||||||| ||||| || Sbjct 527062 TACAACATCCAGAAAGAATCGACGCTTCA 527090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 ||| || ||||| || || || ||||| |||| || || | ||||| | || || || Sbjct 527112 CGGTACCATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGACGTCGA 527171 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || ||| || |||||| | | ||| |||||| ||||| || || || || || Sbjct 527172 CTCTGGTGATACGATCGAGACTGTCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCGCC 527231 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||||||||| | || || || || || || | || |||| ||||| | | ||| Sbjct 527232 CGACCAACAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAGGATGGACGCACGCTTGCCGA 527291 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || || || | ||||| Sbjct 527292 CTACAACATCCAGAAAGAGTCGACTCTGCACCTGGTGCT 527330 >seq179 Length=351413 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 ||| || ||||| || || || ||||| | || || || |||||||| | || || || Sbjct 23609 CGGTACGATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGA 23550 Query 25052 GTCGTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || ||||| |||||| | | || || || | ||| ||||| || || || || | Sbjct 23549 CTCAGGCGACACGATCGAGACGGTCAAAGCCAAGATTCAG-GACAAGGAGGGCATCCCTC 23491 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 |||| |||||||| | ||||||||||| || || | || |||| |||||| | | || Sbjct 23490 CTGATCAACAGCGTCTGATTTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCG 23431 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| || || || || || ||||| ||| | || || Sbjct 23430 ACTACAACATCCAGAAGGAGTCGACGCTGCATCTCGTCCT 23391 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 || || ||||| || || || ||||| |||| || || |||| || | || || || Sbjct 22915 GGTACGATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGAC 22856 Query 25053 TCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||| |||||| ||||| | ||||| | || | ||| ||||| || || ||||| || Sbjct 22855 TCGGGTGACACGATCGAAACTGTGAAGGCCAAGATTCAG-GACAAGGAGGGTATTCCCCC 22797 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||||||||| | || || |||||||| || | || |||| |||||| | | ||| Sbjct 22796 GGACCAACAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGA 22737 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || ||| | ||| | || || Sbjct 22736 CTACAACATCCAGAAGGAGTCGACGTTGCATCTCGTTCT 22698 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT-C 25054 || ||||| || || || ||||| |||| || || | || || | || ||||| | Sbjct 23836 ACGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGC 23777 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 | | ||||| |||||| | ||||| || ||| || || || || || || ||||| Sbjct 23776 GGC-GACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGA 23718 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||||||||| || | || || | ||||| ||| || || Sbjct 23717 CCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTA 23658 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || ||||| ||| | || || Sbjct 23657 CAACATTCAGAAGGAGTCGACGCTGCATCTCGTCCT 23622 >seq634 Length=872753 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| |||| ||||| | ||||| |||| || || ||| Sbjct 526884 ACGATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCG 526825 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | | ||| || ||| ||||| || || ||||| || ||| Sbjct 526824 GGCGACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGAC 526765 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || || || ||||| || | || |||| ||||| | | ||| ||| Sbjct 526764 CAACAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTAC 526705 Query 25176 AATATTCAAAAAGAATCCACG 25196 || || || || || || ||| Sbjct 526704 AACATCCAGAAGGAGTCGACG 526684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324477449605