Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq179 111 1e-19 seq334 107 2e-18 seq67 98.7 8e-16 seq634 91.5 1e-13 >seq179 Length=351413 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || || ||||| ||||| || || |||||||| Sbjct 22825 AAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGTCTGATCTTCGCCGGCAAG 22766 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| || |||| |||||||| || || || || || | ||| Sbjct 22765 CAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGTTGCAT 22706 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| |||| |||| || ||| Sbjct 22705 CTCGTTCTGCGTCTGCGTGGTGGT 22682 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||| ||||||||||| || || || || ||||| || || |||||||| Sbjct 23287 AAGATTCAGGACAAAGAGGGTATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAG 23228 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| || |||| |||||||| || || || || || | ||| Sbjct 23227 CAGCTGGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGTTGCAT 23168 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| ||||| |||| || ||| Sbjct 23167 CTCGTTCTGCGACTGCGTGGCGGT 23144 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || ||||||||||| || || |||||||| ||||| || || |||||||| Sbjct 23056 AAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAACAGCGTCTGATCTTCGCCGGCAAG 22997 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| |||||| ||| ||| | ||||||||||||| || || || || || | || Sbjct 22996 CAGTTGGAGGATGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAGTCGACACTTCAC 22937 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||| |||| || ||| Sbjct 22936 TTGGTCCTGCGTCTGCGTGGTGGT 22913 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| || ||||| ||||||||||| || || || |||||||| ||||| || |||| Sbjct 23526 TCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAACAGCGTCTGATTTTTG 23467 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 |||| || ||| | |||||| |||||| || |||| |||||||| || || || || | Sbjct 23466 CCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGA 23407 Query 22415 CCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | | ||| | || |||| |||| || ||| Sbjct 23406 CGCTGCATCTCGTCCTGCGTCTGCGTGGTGGT 23375 >seq334 Length=1041161 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || || |||||| || || || || || || ||||| || || |||| || || || || Sbjct 526650 TGGAACGATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACCATCACGCTCGACGTCGA 526709 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 || ||| || | || |||| || || || |||||||||||||| || || Sbjct 526710 CTCCGGCGACACGATCGAGACGGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCC 526769 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || ||||| || ||||| ||||| ||| | |||||| |||||| || |||| Sbjct 526770 GGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTCGCCGA 526829 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||||||||| || ||||| || | || | ||| |||| Sbjct 526830 CTACAACATTCAGAAGGAATCGACGCTTCACCTCGTTCTGCG 526871 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || || |||||| || || || || || | || || || ||| |||| || || || || Sbjct 526881 TGGAACGATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTCGA 526940 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | || ||| | || | |||| ||||| || |||||||||||||| || || Sbjct 526941 CTCTGGTGACACCATCGAGACTGTCAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCC 527000 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || || || || ||||||||||||||| | |||||| ||||| | |||| Sbjct 527001 GGACCAGCAGCGACTCATCTTTGCCGGCAAACAGCTCGAGGATGGGCGCACGCTTGCCGA 527060 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || |||||||| || | || | || ||||| | || || ||| Sbjct 527061 CTACAACATCCAGAAAGAATCGACGCTTCACCTCGTCCTGCGACTTCGTGGCGGT 527115 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || || | ||||| || ||| |||| || || |||| | | Sbjct 945015 GATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGTC 945074 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | |||| || || || ||||||||||| ||||| || || || Sbjct 945075 GGACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 945134 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| ||||| || ||||| || || ||| | ||||| |||||| | |||| ||||| Sbjct 945135 ACAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAA 945194 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || || || Sbjct 945195 CATCCAGAAGGAGTCGAC 945212 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || || || | Sbjct 527119 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGACGTCGACTCTGGT 527178 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||||| || ||||||||||| || || ||||| ||| Sbjct 527179 GATACGATCGAGACTGTCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCAA 527238 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| ||||| | |||| |||||| Sbjct 527239 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTACAAC 527298 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 527299 ATCCAGAAAGAGTCGAC 527315 >seq67 Length=308067 Score = 98.7 bits (108), Expect = 8e-16 Identities = 183/267 (69%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 130098 TTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGC 130157 |||||| || ||||| ||| | ||||| |||||||||||||| | || | || | || Sbjct 207919 TTTCAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGC 207860 Query 130158 GCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAG---ACTCG 130211 |||||| ||||| ||| || ||||| |||| ||| |||| ||| | || || || Sbjct 207859 GCCCTTGCGTTTCCCGCCGCCCTGGTCGACGTAGCG---GGCAGTGTCGGAGAACACGCG 207803 Query 130212 CAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGC 130271 | ||| | | | ||||| | ||||||||| || | |||| | ||| || Sbjct 207802 AAGCATGGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGC 207743 Query 130272 CCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATC 130331 || ||||| || ||| | || ||||||||| | | || || || | ||||| || Sbjct 207742 GCGCACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTC 207683 Query 130332 GCGTAGCGTTTCATAAATGCCAACGAT 130358 ||| ||||| || || ||||| |||| Sbjct 207682 GCGCAGCGTGTCGTAGATGCCCTCGAT 207656 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/160 (75%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC-AC-TGTACTCGACAATTTCGG 129754 ||||| |||| ||||||||||| | |||| | | || |||||||||| ||||| | Sbjct 208375 ATCGACGCCAGGTTGCAGACGGCCGTCTCGTCC--GCCGACGTGTACTCGACGATTTCCG 208318 Query 129755 CGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAG 129814 ||||| ||||| | || || || |||| | ||| || || || ||||||||| Sbjct 208317 TGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAG 208258 Query 129815 CATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 | || |||||||||||||| ||||| ||||||||||| || Sbjct 208257 CGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTG 208218 Score = 82.4 bits (90), Expect = 6e-11 Identities = 203/308 (66%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 128929 TGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCC 128988 || ||||| |||| |||||||||||| ||||| |||||| ||| || || ||| Sbjct 209137 TGGTCAATGAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCC 209078 Query 128989 CACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTG 129048 || || || ||||| || || | | | | || ||| ||||||||||| || Sbjct 209077 CAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGAC 209018 Query 129049 CCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAA 129108 ||||||| ||| || | | || |||| | |||| ||| | | ||||||| Sbjct 209017 CCGTTGTGTGCCATCAGCTGGTGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAGG 208958 Query 129109 TCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAA 129168 || | || || ||||| || || || ||||| |||| || || | |||| Sbjct 208957 TCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAG 208898 Query 129169 ATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCG 129228 |||||| | ||| ||||||| || | || ||||| || | || || |||| ||| Sbjct 208897 ATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCT 208838 Query 129229 GTGGGCAT 129236 |||||||| Sbjct 208837 GTGGGCAT 208830 >seq634 Length=872753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || ||||| ||| |||| || || || || | Sbjct 526882 GATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCGGG 526823 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || |||| || || || ||||||||||||||||| || || || Sbjct 526822 CGACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCA 526763 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| ||||| || || || ||||| ||| | |||||| ||||| || |||| ||||| Sbjct 526762 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTACAA 526703 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || || || Sbjct 526702 CATCCAGAAGGAGTCGAC 526685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724588004855