Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq377 93.3 9e-14 seq1 93.3 9e-14 >seq377 Length=2385 Score = 93.3 bits (102), Expect = 9e-14 Identities = 171/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| ||||| | ||| |||||| || || |||||||| || | ||||||| Sbjct 1678 TTCATGACACCGGCCTTTTGGTATTCACCGACTCGTTTCTCGAAGAAGTTCGTCTTGCCC 1619 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643 | || ||| || ||||| | ||||| |||||| | | ||||| || || ||| || Sbjct 1618 TGAAGGCTGATCAGGTCCATCCACTCGAACGGGTTTTCGACTTTGTAGTGTTTCGGAAGG 1559 Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703 || || || | | | ||||| ||||||||||| | ||||| |||||| ||| Sbjct 1558 CCCAGCGCAGCCAGCAACCGGTCAGCCACAAACTCGATGTACTGCGACATCAGGAGAGAA 1499 Query 251704 TTCATGCCAATCATACGACAA--GGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAA 251761 ||||||||||| | | ||| || | || || || | ||||||||| || | ||| Sbjct 1498 TTCATGCCAAT--GAGGTCAACTGGTAGCGCATCGCAAACGAATTCCTTCTCAATCTCAA 1441 Query 251762 CTGCCTCCT 251770 | || |||| Sbjct 1440 CAGCTTCCT 1432 >seq1 Length=1479440 Score = 93.3 bits (102), Expect = 9e-14 Identities = 171/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| ||||| | ||| |||||| || || |||||||| || | ||||||| Sbjct 1039953 TTCATGACACCGGCCTTTTGGTATTCACCGACTCGTTTCTCGAAGAAGTTCGTCTTGCCC 1040012 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643 | || ||| || ||||| | ||||| |||||| | | ||||| || || ||| || Sbjct 1040013 TGAAGGCTGATCAGGTCCATCCACTCGAACGGGTTTTCGACTTTGTAGTGTTTCGGAAGG 1040072 Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703 || || || | | | ||||| ||||||||||| | ||||| |||||| ||| Sbjct 1040073 CCCAGCGCAGCCAGCAACCGGTCAGCCACAAACTCGATGTACTGCGACATCAGGAGAGAA 1040132 Query 251704 TTCATGCCAATCATACGACAA--GGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAA 251761 ||||||||||| | | ||| || | || || || | ||||||||| || | ||| Sbjct 1040133 TTCATGCCAAT--GAGGTCAACTGGTAGCGCATCGCAAACGAATTCCTTCTCAATCTCAA 1040190 Query 251762 CTGCCTCCT 251770 | || |||| Sbjct 1040191 CAGCTTCCT 1040199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027828016170947