Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq556 203 6e-47 seq334 176 8e-39 seq179 176 8e-39 seq377 95.1 2e-14 seq1 95.1 2e-14 >seq556 Length=883518 Score = 203 bits (224), Expect = 6e-47 Identities = 216/285 (76%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| | ||| ||||||| || |||| |||||| || || ||||| || ||||| || Sbjct 618089 CTGCATCATCATCCACATGGCAGCGACGTAGTCCTTGGCGTGCCCCCAGTCACGCTTGGC 618148 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCG 268365 ||| |||||||||||| ||||||| | ||| |||||| | | ||| || | | || Sbjct 618149 GTCGATGTTCCCGAGGTACAGGCAGTCCTGTTTGCCGGCCGCGATGCGAGCGACGGCACG 618208 Query 268366 AGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGAT 268425 ||||| || ||||||||||||||| |||||| | ||||| ||||||||||| ||||| Sbjct 618209 CGTGATCTTGCGGGTCACGAACGTCGGGCCACGACGCGGGCTTTCGTGGTTGAACAGGAT 618268 Query 268426 GCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAA 268485 ||| ||| ||||| | ||| || || ||||||||||| || || ||||||| || | Sbjct 618269 GCCATTGGACGCGTGTAGGCCGTACGCTTCACGGTAGTTGACAACAATCCAGTAGGCGTA 618328 Query 268486 CATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGT 268530 | ||| ||||| ||||| || ||||| || | ||| |||||||| Sbjct 618329 CTGCTTGGCAACGGCGTATGGGGAACGCGGGTAGAACGGCGTCGT 618373 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 268567 CTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGC 268626 |||||| || || |||||||||||||| || || || || | | ||||| || Sbjct 618473 CTCGGACGTGGACGCTTGGTAGAACTTGACGGTCTTGCTCAGGCCAGCGGTCCGGATGGC 618532 Query 268627 CTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAA 268686 || |||| ||||| || || | ||| || |||| | || ||||| | ||| || || Sbjct 618533 ATCCAGCAGGCGAAGCGTGCCGAGGCCGTCGACGTTGCCCGTGTACTCGGCCATTTCAAA 618592 Query 268687 TGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTG 268746 || |||| ||| || ||||| ||| ||||||| || || || || || |||| | Sbjct 618593 GGAGACCTTGACGTGACTCTGCGCGGCCAGGTTGTAGACTTCGTCGGGCCTGACGGTCGT 618652 Query 268747 CACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 || ||| | || |||||||| ||||| | ||||| |||||||||| Sbjct 618653 CATGATGTGGACCAGGTTCGTCGAGTCCGACAGGTCGCCGTAGTGCA 618699 >seq334 Length=1041161 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||| || | ||| ||||| || ||||| |||||||| || |||| Sbjct 527114 CCGCCACGAAGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCA 527055 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | ||| || ||||| || ||||||| || ||||| || || Sbjct 527054 AGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGG 526995 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || || |||||||| | |||||||||||| | || || || Sbjct 526994 ATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGACG 526935 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || ||||| |||||||||||||| |||||||| Sbjct 526934 TCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || ||||| || | || | ||| || |||||||| || |||||||| || || Sbjct 527579 TTGCCACCACGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 527520 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 | ||| || | ||| || || | ||||||||| || || || || | || ||||| || Sbjct 527519 GCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGC 527460 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || |||||||||||||| |||||||| |||||||| | |||||||||||| | || || Sbjct 527459 GGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCG 527400 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| |||||||| || || ||||| ||||| ||||| |||||||| Sbjct 527399 ACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 527350 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| |||| |||| ||| || || |||||||| |||||||| || |||| Sbjct 527347 TTCCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGG 527288 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | ||||| || | |||||| || ||||| || || | ||||||||||| | Sbjct 527287 CAAGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCG 527228 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||| |||||||| || || || |||||||| | |||||| || || | || || | Sbjct 527227 GGATGCCCTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGA 527168 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||| ||||| || || ||||| |||||||| ||||| |||||||| Sbjct 527167 CGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 527119 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| ||||| ||||| || |||||||| || |||| Sbjct 945242 CCACCACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 945183 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | |||||||| || ||| Sbjct 945182 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGA 945123 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||||||||||| ||||| | || | || Sbjct 945122 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACA 945063 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || || |||||||||||||| ||||| Sbjct 945062 TCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 945016 >seq179 Length=351413 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || || ||||| || |||||||| ||||||| Sbjct 22914 CCACCACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCC 22973 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || |||||||| |||||||| || || | ||||| || || || Sbjct 22974 AAGGTTCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGG 23033 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| ||||| || | |||||| ||||| |||| || || Sbjct 23034 ATACCCTCCTTATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGACA 23093 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || || ||||||||||| |||||||| Sbjct 23094 TCCAATGTGATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 23140 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || ||||| ||||| || |||||||| || |||| | Sbjct 23376 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23435 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | ||||| || || || Sbjct 23436 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGG 23495 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| || ||||| | |||||| ||||| |||| || || Sbjct 23496 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACA 23555 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || ||||| || ||||||||||| |||||||| Sbjct 23556 TCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || | ||| ||||| || |||||||| || |||| | Sbjct 22683 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22742 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | |||||||| || ||| Sbjct 22743 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 22802 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||| || | ||||| ||||| | || || || Sbjct 22803 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACG 22862 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || || || ||||||||||| |||||||| Sbjct 22863 TCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 22909 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || | ||| ||||| || |||||||| || |||| | Sbjct 23145 CCGCCACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23204 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || ||| Sbjct 23205 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 23264 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| |||||||| ||||| || | ||||| ||||| | || || || Sbjct 23265 ATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACG 23324 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| ||||| || || ||||||||||| |||||||| Sbjct 23325 TCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || || ||||| || |||||||| || |||| | Sbjct 22452 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22511 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || || Sbjct 22512 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 22571 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 ||||| ||||| || || ||||| ||||| || | |||||| || || || | | || || Sbjct 22572 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATC-GCCGCTGTCCAC 22630 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || || ||||| || ||||||||||| |||||||| Sbjct 22631 GTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 >seq377 Length=2385 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||| ||||| || || || |||||||||||| | ||||||| Sbjct 1678 TTCATGACACCGGCCTTTTGGTATTCACCGACTCGTTTCTCGAAGAAGTTCGTCTTGCCC 1619 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 | ||| || || ||||| | || || ||||| ||| | | || || || Sbjct 1618 TGAAGGCTGATCAGGTCCATCCACTCGAACGGGTTTTCGACTTTGTAGTGTTTCGGAAGG 1559 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || || || | | | ||||||||||| |||||||||||||| ||||||| || Sbjct 1558 CCCAGCGCAGCCAGCAACCGGTCAGCCACAAACTCGATGTACTGCGACATCAGGAGAGAA 1499 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||||||| | | || | || ||||||| ||| ||||| || | | || Sbjct 1498 TTCATGCCAATGAGGTCAACTGGTAGCGCATCGCAAACGAATTCCTTCTCAATCTCAACA 1439 Query 10173 GCTTCCT 10179 ||||||| Sbjct 1438 GCTTCCT 1432 >seq1 Length=1479440 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||| ||||| || || || |||||||||||| | ||||||| Sbjct 1039953 TTCATGACACCGGCCTTTTGGTATTCACCGACTCGTTTCTCGAAGAAGTTCGTCTTGCCC 1040012 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 | ||| || || ||||| | || || ||||| ||| | | || || || Sbjct 1040013 TGAAGGCTGATCAGGTCCATCCACTCGAACGGGTTTTCGACTTTGTAGTGTTTCGGAAGG 1040072 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || || || | | | ||||||||||| |||||||||||||| ||||||| || Sbjct 1040073 CCCAGCGCAGCCAGCAACCGGTCAGCCACAAACTCGATGTACTGCGACATCAGGAGAGAA 1040132 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||||||| | | || | || ||||||| ||| ||||| || | | || Sbjct 1040133 TTCATGCCAATGAGGTCAACTGGTAGCGCATCGCAAACGAATTCCTTCTCAATCTCAACA 1040192 Query 10173 GCTTCCT 10179 ||||||| Sbjct 1040193 GCTTCCT 1040199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614715973240