Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq334 156 1e-32 seq634 152 1e-31 seq179 145 2e-29 >seq334 Length=1041161 Score = 156 bits (172), Expect = 1e-32 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || |||||||| ||||||||||| || || | || ||||| |||||| Sbjct 527309 TCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAG 527250 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||||||||| ||||| || || || |||||||||||||| || || | Sbjct 527249 ATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGACAGTC 527190 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || || |||||||||||||| || ||||| ||||| ||| Sbjct 527189 TCGATCGTATCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACG 527130 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 527129 AAGATCTGCAT 527119 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || |||| || ||||| |||| ||| |||||| ||||| || |||||||| Sbjct 527114 CCGCCACGAAGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCA 527055 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | ||||| || || ||||| || ||||| || ||| Sbjct 527054 AGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGG 526995 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||||||||| || || | || || | || | || || || Sbjct 526994 ATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGACG 526935 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || ||||| ||||||||||| |||||||| Sbjct 526934 TCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || ||||| |||| ||| ||| || || || || |||||||| Sbjct 526884 TCCACCACGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGC 526825 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || || | || || || || |||||||||||||| || || Sbjct 526824 GAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGG 526765 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || |||||||| ||||| || || | || || | |||| || || || Sbjct 526764 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGAC 526705 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||||||||||| ||||| ||||| |||||||| Sbjct 526704 GTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| ||||| || | ||| || || ||||| || |||||||| Sbjct 945242 CCACCACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 945183 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || || ||||||||||||||||| || Sbjct 945182 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGA 945123 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||| || || | || ||| | || Sbjct 945122 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACA 945063 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| ||||| || |||||||||||||| ||||| Sbjct 945062 TCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 945016 Score = 127 bits (140), Expect = 5e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || || || | ||| || || |||||||| |||||||| Sbjct 526653 TCCACCACGGAGACGCAGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGC 526594 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||| || ||||| || | || || || ||||||||||| ||||| || || Sbjct 526593 TAGCGTCCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 526534 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT-TCTA 288424 || || || || |||||||| || || |||||| | || || | || | || | || | Sbjct 526533 AATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCAC-CGCTGTCGA 526475 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 526474 CGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 526426 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | ||| || || ||||| || ||||| ||| Sbjct 527576 CCACCACGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 527517 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 |||||||| ||||| || | || || || || |||||||||||||| || ||| Sbjct 527516 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTG---GTCTGGC 527460 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || ||||| || ||||| || || | || || | || | || || Sbjct 527459 GGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCG 527400 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 527399 ACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 527350 >seq634 Length=872753 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||| || || ||||| || ||||||||| Sbjct 526655 CCACCACGCAGACGGAGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 526714 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||||||||||||||| || Sbjct 526715 AGCGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGA 526774 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||| | || || | |||| ||| || || Sbjct 526775 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACA 526834 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 526835 TCGAGCGTGATCGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 526881 >seq179 Length=351413 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | ||| || || ||||| || ||||||||| Sbjct 22683 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22742 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||||||||||||||| || ||| Sbjct 22743 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTG---GTCCGGG 22799 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || || ||||| |||| || | || | ||| || Sbjct 22800 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCG 22859 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || |||||||| ||||| ||||||||||| |||||||| Sbjct 22860 ACGTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 22909 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || |||| || |||||||| | ||| || || ||||| || ||||||||| Sbjct 23145 CCGCCACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23204 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| || || ||| Sbjct 23205 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---GTCCGGG 23261 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| ||||| || || || ||||| |||| || | || | ||| || Sbjct 23262 GGAATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCG 23321 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 23322 ACGTCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 138 bits (152), Expect = 3e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | || || || ||||| || ||||||||| Sbjct 22452 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22511 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| || ||| Sbjct 22512 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 22571 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT-TCTAC 288425 || || || ||||||||||| || || ||||| | || || | ||||| || | || || Sbjct 22572 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGC-CGCTGTCCAC 22630 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| || ||||| ||||||||||| |||||||| Sbjct 22631 GTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | ||| || || ||||| || ||||||||| Sbjct 23376 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23435 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| || || ||||||||||||||| | ||| Sbjct 23436 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGG 23495 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || ||||| || | || || | |||| || || || Sbjct 23496 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACA 23555 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||||||||| |||||||| Sbjct 23556 TCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||||| | || || || || || || || || || |||||| Sbjct 22950 TCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCCAACTGCTTGCCGGCGAAG 23009 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| | ||||| || || |||||||| || || || ||||| | Sbjct 23010 ATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTTCACCGTC 23069 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| || || || || | ||||| |||||||| ||||| ||||||||| Sbjct 23070 TCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTCCCTGTCAGCGTCTTGACG 23129 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 23130 AAGATCTGCAT 23140 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | ||| || || || || || ||||| || |||||||| ||||| Sbjct 23622 AGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCC 23681 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || |||||||||||||| || | ||||| || || |||||| Sbjct 23682 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCC 23741 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT-TCTACTTCGAGCGTGATCGT 288440 ||||| || || ||||| | || || | |||| || | || || || ||||| ||||| Sbjct 23742 TGGATCTTGGCCTTCACCGTCTCGATCGTGTCGC-CGCTGTCCACATCCAGCGTAATCGT 23800 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||| ||||| ||||| |||||||| Sbjct 23801 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179644318747226