Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq377 91.5 3e-13 seq1 91.5 3e-13 >seq377 Length=2385 Score = 91.5 bits (100), Expect = 3e-13 Identities = 173/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA--TGCCGGCTTATTG 243568 ||||| ||||| | || ||||||||| ||||||| || | ||| || | || |||| Sbjct 1434 GAAGCTGTTGAGATTGAGAAGGAATTCGTTTGCGATGCGCTACCAGTTGAC--CTCATTG 1491 Query 243569 GCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCG 243628 ||||||| ||| || ||| ||||||||||| || || || ||||| | | | Sbjct 1492 GCATGAATTCTCTCCTGATGTCGCAGTACATCGAGTTTGTGGCTGACCGGTTGCTGGCTG 1551 Query 243629 CGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTT 243688 |||| || | |||| ||||| | | ||||| || | | ||||| || || Sbjct 1552 CGCTGGGCCTTCCGAAACACTACAAAGTCGAAAACCCGTTCGAGTGGATGGACCTGATCA 1611 Query 243689 CGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTG 243748 ||||| || || || ||||||||||| || || ||| |||| || ||| | |||| Sbjct 1612 GCCTTCAGGGCAAGACGAACTTCTTCGAGAAACGAGTCGGTGAATACCAAAAGGCCGGTG 1671 Query 243749 TGATGAAACCAGA 243761 | ||||| | ||| Sbjct 1672 TCATGAACCAAGA 1684 >seq1 Length=1479440 Score = 91.5 bits (100), Expect = 3e-13 Identities = 173/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA--TGCCGGCTTATTG 243568 ||||| ||||| | || ||||||||| ||||||| || | ||| || | || |||| Sbjct 1040197 GAAGCTGTTGAGATTGAGAAGGAATTCGTTTGCGATGCGCTACCAGTTGAC--CTCATTG 1040140 Query 243569 GCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCG 243628 ||||||| ||| || ||| ||||||||||| || || || ||||| | | | Sbjct 1040139 GCATGAATTCTCTCCTGATGTCGCAGTACATCGAGTTTGTGGCTGACCGGTTGCTGGCTG 1040080 Query 243629 CGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTT 243688 |||| || | |||| ||||| | | ||||| || | | ||||| || || Sbjct 1040079 CGCTGGGCCTTCCGAAACACTACAAAGTCGAAAACCCGTTCGAGTGGATGGACCTGATCA 1040020 Query 243689 CGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTG 243748 ||||| || || || ||||||||||| || || ||| |||| || ||| | |||| Sbjct 1040019 GCCTTCAGGGCAAGACGAACTTCTTCGAGAAACGAGTCGGTGAATACCAAAAGGCCGGTG 1039960 Query 243749 TGATGAAACCAGA 243761 | ||||| | ||| Sbjct 1039959 TCATGAACCAAGA 1039947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102870574856450