Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq67 159 4e-34 seq556 109 7e-19 >seq67 Length=308067 Score = 159 bits (176), Expect = 4e-34 Identities = 674/1047 (64%), Gaps = 38/1047 (4%) Strand=Plus/Minus Query 113594 GATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAG 113653 ||||| ||||||||||| ||||||||||| || | ||||||| || | ||||||||| Sbjct 209248 GATCGCAGGTAGTACATGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGAC 209189 Query 113654 GACAACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGAT 113712 | || |||| | ||| | | || ||| || ||| | ||| || || || || Sbjct 209188 GTCAGCTTGCCAAAGTTAATGTCGGTC-ATGTGGACGTTGAACGATTGCGACTGGTCAAT 209130 Query 113713 GAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGT 113772 |||| || ||||| || ||||| ||||||| |||| |||||| ||||| || || Sbjct 209129 GAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCCCAAACGGT 209070 Query 113773 TCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGC 113832 |||| |||| ||| | ||| | ||||| | || || |||| || |||| Sbjct 209069 CTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGA----CCCGT 209014 Query 113833 CTTGA-CCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCT 113888 || |||| || | | || || | ||| || || || | || ||| Sbjct 209013 TGTGTGCCATCAGCTGGTGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAGGTCCA 208954 Query 113889 CCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATAT 113948 ||| || ||||| |||| || |||||||| || || |||||| ||||| | Sbjct 208953 CCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGT 208894 Query 113949 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGG 114008 || ||||||| ||||| |||||||| ||||| |||| ||| ||| ||| || ||||||| Sbjct 208893 TGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGG 208834 Query 114009 GCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCC---CTAATGCGTTCCTTGA 114065 |||| || || | || | || || | || | || | | || |||| | Sbjct 208833 GCATCGGCGCGAGCAGCAACGAATTCCGCATGCCATG--CCGGGCGATATCGG-CCTTCA 208777 Query 114066 GGGCGTCCCAGTCGTAGTTGAG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATA 114124 | ||||||||||| | | | | | | || | | |||||| || |||||||| || Sbjct 208776 GCGCGTCCCAGTCCCA-TCGCGACGACGGCTTTACATTCCACATGTCGAACTGGAGAATG 208718 Query 114125 CCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTC- 114183 || ||||| || || || || | |||||| ||||| || | |||| || Sbjct 208717 CCCTGGGACGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGTCCTTAACGGCCAGATCC 208658 Query 114184 --GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG-CGAGCATTCATTGC 114240 |||| || | ||| || || || ||||| || ||| || | |||| ||| Sbjct 208657 TTGGAG---GCAGTGCAGGCCGCAAAGTAGATCGTCTCGAAGATGTCGCGG-TTCAGTGC 208602 Query 114241 CTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTG 114300 ||||| || || |||| | || | || || | ||||| || || || Sbjct 208601 GCGCGCCTCCGGCGAGTCGAACGGGTACCGCATCTGGATGAAGGCGTCCGCAAGGCCCTG 208542 Query 114301 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGG 114357 ||| |||| || | || | |||| ||| || || | | ||| | || ||| || Sbjct 208541 GACGCCGATTCCGACGGGCCTGTGTCGCATGTTCGA--TCGGCGCGCT-TCGGGCACAGG 208485 Query 114358 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 114417 ||| | || | ||||| ||| | || || || || ||| | || | || | Sbjct 208484 GTAATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAGTGTACGTCACGTCGTA 208425 Query 114418 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 ||||| | | | || || || | ||| |||| |||| | || ||||| || Sbjct 208424 CAGCTTATGGAAGTCGAACGTGG------CGTCAGTGACGAACTTGGACAGTGCGATCGA 208371 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 |||||| || || || | ||||| ||| |||||||| | |||||||| |||| Sbjct 208370 CGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACGTGTACTCGACGATTTCCGTGCACAG 208311 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || ||||| || || |||| |||||| || || ||||| |||| || || ||||| Sbjct 208310 GTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAGCGTCCTT 208251 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTC 114624 ||| | |||||| ||||||||||| || Sbjct 208250 GTACATCATGTAGGGCGTCCCCGTTTC 208224 Score = 118 bits (130), Expect = 1e-21 Identities = 240/354 (68%), Gaps = 7/354 (2%) Strand=Plus/Minus Query 114877 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 114936 || ||||| || || | ||| |||||||||||||||||||||||||| |||| | || Sbjct 207916 CAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCC 207857 Query 114937 CTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCAT 114993 ||| || | || |||||| || || | || ||| | || ||||||||||| Sbjct 207856 CTTGCGTTTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCAT 207797 Query 114994 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTG 115051 || | ||| || | || ||| || || || |||| || ||| | |||| | Sbjct 207796 GGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCC--GGTGGCGCGC 207739 Query 115052 ACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 115111 || | || | ||| | ||||| || || ||| |||| ||||| ||||| || Sbjct 207738 ACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGC 207679 Query 115112 AGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGAC 115171 || || ||||||| || ||||| ||||| ||| || | ||||||||| |||| Sbjct 207678 AGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGAC 207619 Query 115172 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||||| || || || || |||||||| | ||| || | |||||| ||||| Sbjct 207618 ATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAAC 207565 >seq556 Length=883518 Score = 109 bits (120), Expect = 7e-19 Identities = 195/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 || ||||| ||| | || || || |||| | || || || ||||||||||| Sbjct 618307 AACTACCGTGAAGCGTACGGCCTACACGCGTCCAATGGCATCCTGTTCAACCACGAAAGC 618248 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTC 8768 || |||||||||||| |||||||| |||||||| || || | |||| Sbjct 618247 CCGCGTCGTGGCCCGACGTTCGTGACCCGCAAGATCACGCGTGCCGTCGCTCGCATCGCG 618188 Query 8769 GCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACAC 8828 || || | ||| | | | | | |||||| || ||||| || | |||||||| ||| Sbjct 618187 GCCGGCAAACAGGACTGCCTGTACCTCGGGAACATCGACGCCAAGCGTGACTGGGGGCAC 618128 Query 8829 GCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATAT 8888 ||||||||||| || | ||||||||| | | | || || || || |||| || || Sbjct 618127 GCCAAGGACTACGTCGCTGCCATGTGGATGATGATGCAGCAGGAGAAGCCGGATGACTAC 618068 Query 8889 GTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 8933 ||| ||||||| || ||||| ||| | ||| | || ||||| ||| Sbjct 618067 GTCATCGCGACCGGCGAGACGCACACGGTCCGCGAATTCGTCGAG 618023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348619564360