Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq179 132 5e-26 seq334 129 6e-25 >seq179 Length=351413 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| || | ||||| || |||||| ||||| ||||| || ||||| || ||| | Sbjct 23618 ACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCC 23677 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || || ||||||||||| | || | || |||||| Sbjct 23678 GTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 23737 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGA 42171 ||| ||| || || | |||| | | |||||||| || | |||||||| | ||| | Sbjct 23738 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGC-CGCTGTCCACATCCAGCGTAA 23796 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| || ||||| || ||||| ||||| Sbjct 23797 TCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41979 CGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCA 42038 ||||| || | | ||||| || | ||||| ||| |||||| || || ||||| || Sbjct 22449 CGACCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCG 22508 Query 42039 GCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCT 42098 || || || || | || || |||||||| || ||||| || || ||||||||||| | Sbjct 22509 GCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGC 22568 Query 42099 GGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TC 42157 || | || |||||| ||| ||| || || | |||| | | ||| |||| || | || Sbjct 22569 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGC-CGCTGTC 22627 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | || || || |||||||| |||||||| || ||||| ||||| Sbjct 22628 CACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| || | |||||| || |||||| || || ||||| || || || || || | Sbjct 23157 CGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCA 23216 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||| | || | | ||| ||| Sbjct 23217 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTG 23276 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| | || | || | ||| | | ||||| | ||| || || || | ||| || Sbjct 23277 TCC-TGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAAT 23335 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || |||||||| || ||||| ||||| Sbjct 23336 GGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 >seq334 Length=1041161 Score = 129 bits (142), Expect = 6e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || || || |||||| |||| || |||||||| || ||||| Sbjct 526617 CTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCCGTCCTCAAGCTGCTTGCCGGCGAA 526558 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | | |||||||||| ||| || || | || Sbjct 526557 GATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGT 526498 Query 42137 CGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| | || | || || |||| ||| ||||| |||||||| || ||||| | Sbjct 526497 CTCGATCGTGTCAC-CGCTGTCGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCA 526439 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 526438 CGAAGATCTGCAT 526426 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| || || |||| || |||||||||||||| || Sbjct 945207 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAA 945148 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||| ||||| | || | || |||||||||| ||| || |||| | Sbjct 945147 GATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGC 945088 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| ||| ||||||||| ||||| || ||||| || |||||||| || Sbjct 945087 CTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGAC 945028 Query 42197 AAAGATTTGCAT 42208 || |||||||| Sbjct 945027 GAATATTTGCAT 945016 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || || || || || | || || |||||||| ||||| || Sbjct 526847 TCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 526788 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | | |||||||||| ||| || |||| |||| Sbjct 526787 ATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTC 526728 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||| || || || |||| ||||||||| || || || | ||||| || Sbjct 526727 TCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACG 526668 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 526667 AAGATCTGCAT 526657 Score = 111 bits (122), Expect = 2e-19 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || ||||| || || || || ||| | || || ||||| || || || || Sbjct 527078 TCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAG 527019 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||||||||||||||| | || | | |||||||||| |||||| |||| ||| Sbjct 527018 ATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGTC 526959 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | || || || || | |||||| || |||||||| || ||||| || Sbjct 526958 TCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACG 526899 Query 42198 AAGATTTGCAT--TTTCACGCCGAATAC 42223 ||||| ||||| || ||| |||| || Sbjct 526898 AAGATCTGCATCGTTCCACCACGAAGAC 526871 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || ||| |||| || |||||||| || || || Sbjct 527541 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAA 527482 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||| | || | || ||||||||| ||| | || | |||| | Sbjct 527481 GATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCC-TGAATCTTCGCCTTGACAG 527423 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | ||||| | || || ||||| | |||||||| || || || |||||||| | Sbjct 527422 TCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCA 527363 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 527362 CGAAGATCTGCAT 527350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543208270963280