Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq334 141 9e-29 seq179 136 4e-27 seq634 105 7e-18 seq67 95.1 1e-14 >seq334 Length=1041161 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | || || || || |||| |||||||||||| || |||||||| || || Sbjct 527115 ACCGCCACGAAGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGC 527056 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || ||||| ||||||||| | ||||| ||||||||||| || || Sbjct 527055 AAGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGG 526996 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || ||||| ||| ||| ||| | || ||||| | ||| || Sbjct 526995 GATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGAC 526936 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || ||||| || ||||| Sbjct 526935 GTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||||||| || ||||||||||| || |||| ||||| | || Sbjct 526868 AGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATCC 526809 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| ||| | || || ||||||||||| || || || || || || || Sbjct 526808 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCC 526749 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || |||| ||| || || | || | |||| Sbjct 526748 TGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGTC 526689 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || || ||||| || ||||| Sbjct 526688 TTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | |||||| || || || || ||||| || || | || ||| |||| Sbjct 526637 AGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCCGTCC 526578 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||||||| | || || |||||||||||||| ||||| || || || || Sbjct 526577 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCC 526518 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||||| ||| || || | || | |||| Sbjct 526517 TGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTC 526458 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 526457 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 526426 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || |||||||| || |||| |||||| |||| Sbjct 527562 AAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTC 527503 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| || ||| | || || ||||||||||| || || || ||||| || || Sbjct 527502 CTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTC 527443 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | || ||||| | || || || | ||| | ||| Sbjct 527442 CTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGT 527383 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || ||||| || ||||| Sbjct 527382 CTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 527350 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | |||||| || || || |||||||| || || | ||||| |||| Sbjct 945228 AAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTC 945169 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| || ||| | || || ||||| ||||| || ||||| || || || || Sbjct 945168 CTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTC 945109 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGG 64409 || || || ||| || |||| | || || || || |||| || | || | | Sbjct 945108 CTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACG-CCACATCGAGTGTGATCG 945050 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| | || || ||||| |||||||| Sbjct 945049 TCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 945016 >seq179 Length=351413 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| || || || ||||| | |||||| || || || |||||||| || || Sbjct 23144 ACCGCCACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGC 23203 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 23204 GAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 23263 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || ||||| || || || || ||| || || | ||| ||||| | ||| || Sbjct 23264 AATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGAC 23323 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || |||| || || ||||| || ||||| Sbjct 23324 GTCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | || || ||||| | |||||| || || ||||||||||| || || Sbjct 23606 ACCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGC 23665 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || ||||||||||||||| | || || ||||||||||| || || Sbjct 23666 CAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGG 23725 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || ||| |||||| Sbjct 23726 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCAC 23785 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || ||||| || ||||| Sbjct 23786 ATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||| | ||||| || || || |||||||| || || Sbjct 22451 ACCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGC 22510 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 22511 GAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 22570 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || ||| | ||||| ||| |||||| Sbjct 22571 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCAC 22630 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || ||||| || ||||| Sbjct 22631 GTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||| | |||||| || || || |||||||| || || Sbjct 22682 ACCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGC 22741 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || || |||||||||||||| | || || ||||| ||||| || || Sbjct 22742 GAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGG 22801 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| || | || ||||| | ||| || Sbjct 22802 AATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGAC 22861 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || |||| || || ||||| || ||||| Sbjct 22862 GTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 22909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || || || ||||||||||| || | ||| || | || || | |||| Sbjct 22938 TGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCCAACTGC 22997 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| | || || ||||| || || ||||| || || || || || || || || Sbjct 22998 TTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTG 23057 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | || || || | ||| || || | || | |||||| || ||| Sbjct 23058 GCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTCCCTGTC 23117 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| || ||||| Sbjct 23118 AGCGTCTTGACGAAGATCTGCAT 23140 >seq634 Length=872753 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | |||||| || || || |||||||| || || Sbjct 526654 ACCACCACGCAGACGGAGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGC 526713 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || || ||||||||||| || | || || ||||| ||||| ||||| Sbjct 526714 GAGCGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGG 526773 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || ||| | || || || | ||| || Sbjct 526774 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGAC 526833 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || |||| || || ||||| || ||||| Sbjct 526834 ATCGAGCGTGATCGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 526881 >seq67 Length=308067 Score = 95.1 bits (104), Expect = 1e-14 Identities = 292/440 (66%), Gaps = 15/440 (3%) Strand=Plus/Minus Query 155007 ATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCT 155063 ||||| ||||||||||| || | || ||||| | |||||| |||||||| || || Sbjct 207897 ATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCCCTTGCGTTTCCCGCCGCCC 207838 Query 155064 TGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCC 155123 || || |||| || || | | ||||||| | || || | | |||| | | | Sbjct 207837 TGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCATGGGGACGATGCCGTTCGAC 207778 Query 155124 GTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCC 155183 |||||||| || ||||| || | |||| || ||| | || || || | ||||| Sbjct 207777 GTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACGTTGTGCACGTGGACGCCA 207718 Query 155184 AAACCTCC-GCCGTATT-TAGATATTTGCGCACAGTCCGC-CAAAGTTTCGTACATTCCT 155240 | || || |||| || |||| | ||||| | ||| || || ||||| || || Sbjct 207717 ATGCCGCCGGCCGACTTGGAGATGATGGCGCA---TTCGCGCAGCGTGTCGTAGATGCCC 207661 Query 155241 TTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGA-GGGC- 155298 | |||| ||| | || | || || || ||| || || || | ||| || || |||| Sbjct 207660 TCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGACATTTGCGG--GACGGGCG 207603 Query 155299 AGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGT 155358 |||||| || | || || ||||| || ||| || | || | | ||||| Sbjct 207602 TGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTCTCGGACATGAGGTTGT 207543 Query 155359 AAGTTTCGATGGCGGCGTCAATGTCACGAC-CGTGTATACCGATCGCCACGCGCATCAGC 155417 | |||| |||||| || | || || |||| ||| || |||| || |||||||||||| Sbjct 207542 ACGTTTGGATGGCCGCCGCGATATC-CGACTTGTGGATGCCGACGGCGACGCGCATCAGC 207484 Query 155418 ATGTGTTGAATGCGCTCCGC 155437 ||||| || |||||| || Sbjct 207483 ATGTGCTGTGGGCGCTCGGC 207464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640634211480